Setaria viridis (green foxtail): 117854563
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Entry
117854563 CDS
T07951
Name
(RefSeq) tRNase Z TRZ3, mitochondrial
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svs03016
]
117854563
Enzymes [BR:
svs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
117854563
Transfer RNA biogenesis [BR:
svs03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
117854563
Prokaryotic type
117854563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_4
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
117854563
NCBI-ProteinID:
XP_034592681
LinkDB
All DBs
Position
5:complement(449589..461250)
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AA seq
1541 aa
AA seq
DB search
MPQVAAPLRLLLPLSQTLAPAPLLHLSRRLFTSSSPSFGRAASLRALAYRRHHHPRRGSS
TLRKPPREEMAGGGDKEVAFNRKRAEGNDGGKRGSMELKTRKLNPVNTTCYVQILGTGMD
TQDTSPSILLFFDKQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLTRVCSETAGGLPGLVL
TLAGIGDEGMSVNIWGPSDLDFLAGAMRSFIPNRAMLHTHSFGAERSASSSQPKDSVIIL
DDEVVRISAMFVKPKYHNGAGSLNDIDLKPGDTAIVYACELPDIKGKFDPAKAAALGLKP
GPKYRELQLGNSVQSDKFDEMVHPSDVLGPSIPGPTVLLVDCPTQYHMPELFSLQSLSCF
YEDSSDPTKSGKTVNCIIHLGPSSVTKAVDYQNWMKKFGATQHIMAGHEIKNMEIPILKG
SARISSRLNFVCPQLFPSSGFWSVEPANDVMENDKRTSSEICGSVFAQNLLKFHLRPYAQ
LGLDSASIPSLFTYKDIVEELVSEIPEVREVPEQVHKFWQNNVNYKNTLMVEEPWINQKS
DKLDDGTIFQKHQRDNQEIPCCVEDATREDMEITFLGTGSSQPSKYRNVSSIYINLFARG
GILLDCGEGTLGQLKRRFGVNGADEAVKNLRCIWISHIHADHHTGLARVLALRSKLLKGM
PHKPLLVIGPRPLERFLNAYSTLEDLDMQFLDCRHTLKPSVEAFLSENVTGSATPQLENT
MFAPGSRMENYNRKPASPRDTTALANFKEVLLESGLEILYSVPVVHCPQAFGVVLRAMEK
VNSAGKVIPGWKVVYSGDTRPCPALIDASRDATVLIHEATFEDSMKDEAIARNHSTTKEA
IEVGTSAGAYRIILTHFSQRYPKIPVIDEVDMEKTCIAFDLMSVNLMDLPVLPKVLPHLK
VLFKDELVVEEADEIQEALRLIKYSVGKSGTDFKREMQRHSAAMRQLVHYRGHPDPLRGD
ALNKAVRETANEAIAAIFSTEDPKPAVATESLGKRIQGFGNTNYEPSRMDDKKSFLSELS
EVVGIGSASIKQGLSNFAAAHAMMTNDNGGTYKSPNLRRSLTTESERYGRYDPSEIQSES
RASSGASKNVASGSWGPTPSSSAPTDDTSSSQPGIKTREERLLETIVTASGVRLQPTRDA
LQIFLTEASKLDAVALSRALENKLNSPLWQVRMKAICVLEAIVRKQDTDPYSIIASYFIE
NTASVVKCSELPQVSLREKASKVLNMLIGEQPTGTTNLSATKAAMPPPVQMPDLIDTGNQ
DDLGTSSGQESNGQNTGNSAYVSSVDDLLGGEPIADTSVPADSNGSDPFADVSFHEAETK
ENNDLFSGLTVEEKSSAAMPDSSSSNKNELPDIFGSNPDPFIQGSVTDQGTVNDLMAGLN
LNGTDQVQHAVKAEPNSNLNGSQFFDTNNQTSNMAGAAALNGILGQNSFYQQQQVPLQYS
LPQHMMLNQSFPGQQLNYGAMGILLAQQQQLLQNFGNFNAGVGNSPFDPMNSGNASVLPD
IFNSSNQPQNHVAVTSNSKKDDTRAFDFVSDHLAAARGSRK
NT seq
4626 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtggcggcccctctccgcctcctcctccccctctcccaaaccctagccccc
gccccgctcctccacctctcgcgccgcctcttcacctcctcgtccccctccttcggccgg
gccgccagcctccgcgccctcgcctaccgccgccaccaccacccccgccgcgggagcagc
acgctcaggaagccgcccagggaggagatggccggcggcggggataaggaggtggccttc
aacaggaagcgggcggaggggaatgacggcgggaagcgcggtagcatggagctcaagacc
cgcaagctcaaccccgtcaacaccacctgctacgtgcagattcttggtacagggatggac
acacaggacacttcaccttcaattttgctcttctttgacaaacaaaggtttatatttaac
gccggcgagggtcttcaacgtttctgtactgaacacaagattaagttatcaaagattgac
catatctttttgactcgcgtgtgctcagaaactgcaggggggctgccaggcctggtgcta
actctagcaggcataggagatgagggcatgtcggtgaacatatggggcccttctgacctt
gactttctagccggggcaatgagatcttttatcccaaatagagcaatgcttcacacacat
agctttggtgctgaacggagtgcatcttcttcacaacctaaagactccgttattattctt
gatgatgaagtagttcggatatcagcaatgtttgtcaaacctaagtaccacaatggagct
ggtagcttgaatgatattgacttgaagccaggtgatactgctatagtctatgcgtgtgaa
ttgccagatattaagggaaagtttgaccctgctaaggctgctgcccttggtctgaagcct
gggcccaagtatcgtgaacttcaacttgggaactcagtgcagtctgataagtttgacgaa
atggttcatccaagtgatgttcttggcccgtcaattcctggaccaactgttcttctggtg
gattgccctacacaatatcatatgccagaacttttctcactgcaatcccttagctgcttt
tatgaagactcttcagacccaacaaagagtggcaagacagtaaattgtataatccactta
ggtccatcatctgtgactaaagctgttgactatcagaactggatgaaaaaatttggtgca
acacaacatattatggcaggacatgaaattaaaaacatggaaattccaatcttgaaaggt
agtgcaaggatatcatcgcgcctcaattttgtatgccctcagctcttcccatcctctggg
ttttggtctgtggaacctgcaaatgatgtcatggagaatgataagaggacttcatcggaa
atctgtggaagtgtgtttgcgcaaaatctgctcaagtttcatctgcgtccatatgctcaa
cttgggttggatagtgcttctattccaagcttgttcacctacaaggatattgtagaagag
cttgtatccgagatcccagaggttagagaagttcctgaacaggttcacaaattctggcaa
aataatgtgaactataaaaatacactgatggttgaagagccatggatcaatcaaaaatca
gataagctagatgatggcactattttccaaaagcatcaaagggacaatcaagagatccct
tgttgtgtggaggatgcaacgagggaagatatggagattacatttttgggtacaggttca
tcccagccttcaaaatatcggaacgtaagttccatatatattaacttgtttgctcgagga
ggtatacttcttgactgcggtgaaggaactttaggacaactaaaaaggaggtttggtgta
aatggtgctgatgaagctgtaaaaaatttgaggtgtatttggatttcccatattcatgct
gatcaccacacagggttagctagagttctagctctaaggtctaaattgttaaaggggatg
cctcataaaccgttgcttgtgattggaccaagaccccttgagagattcctaaatgcatat
tcaacgcttgaagatcttgacatgcaattcctagactgcaggcatactttgaagcctagt
gttgaggcttttctcagtgaaaatgttactggatcagccacacctcaactggagaacacc
atgtttgcccctggcagtagaatggagaactacaacaggaagcctgcaagtccaagggat
accacagctcttgctaattttaaagaggttctgctggaatcaggtttggagattctgtac
agtgtccctgtagtacactgtccacaggcatttggcgttgttttgagagccatggagaag
gtgaacagcgctggaaaggttattccaggctggaaggttgtatattctggcgacacaaga
ccctgtccagctcttatagatgcatccagagatgccacagtgctaatacatgaggcaaca
ttcgaggacagtatgaaggacgaagcgattgcgaggaaccatagtacaacaaaggaggca
atagaagtaggcacatcggctggagcataccggatcattttgacccacttcagccagcga
tacccaaaaatcccagttattgacgaggtcgacatggagaagacgtgcattgcctttgac
ctgatgagcgtaaacctcatggatttgccggttttgccaaaggtcctgccacacctgaag
gtcctattcaaggacgagctggtagttgaggaagctgatgagatccaagaggccttacgg
ttgatcaaatactcagttggaaaatctggtactgatttcaagagggagatgcaaaggcac
tcagctgctatgcgccaacttgttcactacagaggccaccctgatcccttaagaggagat
gcccttaataaggctgtccgtgaaactgcgaacgaggctatagctgcaattttctccacc
gaggaccctaaacctgctgttgcaacagaaagtcttggcaagcgtatacagggctttgga
aacacaaactatgaaccatctagaatggatgacaagaagtctttccttagtgaactcagc
gaggtagtgggtattggaagtgcatccattaagcagggtttgagcaactttgctgcagca
catgcaatgatgacaaatgataatggtggcacatacaagagccctaacctccgtaggtct
ttgaccacagaatctgaaagatacggtcggtatgatccaagtgaaattcaaagtgagagc
cgtgcctcatctggtgcttccaagaatgtggcatctggttcttggggtccaactccttcc
agttctgcaccgactgatgatactagctcaagtcaaccagggattaagactcgcgaagag
agacttttggagacaattgttactgcaagtggtgtgcgattgcaacctacacgagatgct
ctgcagatatttttgacagaagcttccaaattggatgcagtcgctttgagccgtgcactt
gaaaacaaactgaattctccattatggcaggttcgcatgaaggctatttgtgtgttggaa
gccattgtacggaaacaggatactgatccttattctatcatcgcttcatattttattgag
aacacagcttcggtagttaaatgctctgagctgccacaggtttctcttagagagaaagcc
tcaaaggtcttgaatatgctgatcggggaacagcctactgggaccacaaatctttcagca
acaaaagctgcaatgcccccacctgttcagatgcctgatttaattgatacaggcaatcaa
gatgatctcggaactagttctggacaggaaagcaatggacagaacactgggaacagtgca
tatgtttcttcagttgatgatttgcttggtggtgaacctattgctgatacaagtgtccct
gctgatagtaatggaagtgatccatttgcagatgtatcattccacgaggcagagactaag
gagaacaatgatctgttctcagggttgacagtagaagagaaatcatcagctgccatgcct
gatagctcatcatcaaacaaaaatgaattaccagatatctttggcagcaaccctgatcct
ttcatccaaggaagtgttactgaccaaggaactgtcaatgatctgatggctggcttgaac
cttaatggaacagaccaggttcagcatgctgttaaagcagagcccaatagcaacctcaat
ggctcgcagttctttgacacaaacaatcagaccagcaacatggcaggtgctgcagcattg
aatggcattcttggtcagaactccttttaccaacagcaacaggttcccttgcagtacagc
ttgcctcaacatatgatgctcaatcagtcatttcctgggcaacagttaaattatggtgcc
atggggattcttcttgctcagcagcagcagctactgcaaaattttggaaatttcaatgct
ggagttgggaattcacctttcgatccaatgaatagtggaaatgcatcagtgcttccagat
attttcaattcaagtaatcaaccgcaaaatcatgttgcagtgacaagcaattccaagaaa
gatgacactagagcttttgattttgtctcggatcaccttgcagcagcacgtggttcaaga
aagtga
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integrated database retrieval system
