Setaria viridis (green foxtail): 117854762
Help
Entry
117854762 CDS
T07951
Name
(RefSeq) coatomer subunit alpha-3
KO
K05236
coatomer subunit alpha
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
svs04131
]
117854762
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svs04147
]
117854762
Membrane trafficking [BR:
svs04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
117854762
Exosome [BR:
svs04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117854762
Exosomal proteins of bladder cancer cells
117854762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
TPR_COPA_B
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_Aladin
Fis1_TPR_C
ENTH
Beta-prop_DCAF12
Beta-prop_At4g14310
Zn_ribbon_19
Motif
Other DBs
NCBI-GeneID:
117854762
NCBI-ProteinID:
XP_034592894
LinkDB
All DBs
Position
5:11747531..11753473
Genome browser
AA seq
1215 aa
AA seq
DB search
MLTKFETKSNRVKGLAFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFH
ATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHAEYPWIVSASDDQTIRIW
NWQSRTCVAVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKAVSPADDIMR
LTQMNTDLFGGIDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILAAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDTVFYVKDRFLRYYEYSTQKEVQVAPIRRPG
TVSLNQSPRTLSYSPTENAILICSDVDGGSYELYIVPKDSAGRSDYLQEARKGAGSSAVF
IARNRFAVLEKSSNNVLVKNLKNEIVKKTSLPIATDGIYYAGTGNILCKAEDRVVIFDLQ
QRLVLGELQAPSVKYVVWSSDMECVALLSKHAIIIANKKLVHRCTLHETIRVKSGAWDEN
GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVIGNNIFCIDRDGKNKLITVDASEYI
FKLALFRKRYDHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNI
QIAVASAKELDDKDHWYRLGIEALRQGNVGIVEYAYQRTKNFDRLAFLYLITGYLDKVGF
MCKIAGQNNNFMGQFHNALYLGDVRKRVEILENAGQLALAYVTAVTHGLTEIADRLSAEL
GENVPSVSDGKTSSLLIPPAPLMSCGDWPLLRVMRGIFDAGLDATGRADQEEDYDDAGGD
WGDEDLEIVDVNNVVENGDVVDHNEEEEVNEEEGGWDLEDLELPPEAETPKAVGVARSTL
FVAPTPGMPVSQIWTQKSSLAGEHAAAGNFDTAMRLLSRQLGIKNFAPLKPLFLDALMGS
HTFLRAFASAPVIPVAVEKGWSESASPNVRGPPALVFTFSQMDDKLKAAYKATTEGKFPE
ALRQFLSILHTIPLLVVDSRREVDEVKELIQIAREYVLGLKMEVKRKELKEDPIRQQELA
AYFTNCNLQKVHTRLVLTSAMGLCFKGGNYATAANFARMLLENSPNEAQAKKARQVVQAC
GDRKDGRQLNYDFRNPFVVCGATFVPIYRGQKDVSCPYCGSRFMPSVEGELCSICELSVV
GADASGLLCSPTQSR
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccaagttcgagaccaagagcaaccgggtcaagggcttggccttccacccgcgg
cggccatggatcctggcgagcctccacagcggcgtcatccagatgtgggactaccggatg
ggcaccctgctcgaccgcttcgacgagcacgacgggcccgtcaggggcgtccacttccac
gccacgcagccgctcttcgtctccggaggtgatgattacaaaataaaggtgtggaactac
aagactcaccgctgcctcttcacgctccacggccacctcgactacattcgcaccgtgcag
ttccatgccgagtatccttggattgtcagtgctagtgacgaccagacaatccggatctgg
aactggcagtcgcgcacctgtgtcgccgtgctcacgggtcataatcattatgtcatgtgt
gcctccttccatcccaaggaggaccttgtggtgtcagcgtctttggaccagactgtgcgg
gtatgggatattggggcactcaggaagaaagcagtctcaccagcagatgacattatgcgc
ctcacccaaatgaacaccgatctgttcggaggcatcgatgctgttgtcaagtatgtgttg
gaaggccatgaccgcggggttaactgggcctcatttcatcccacattacctcttattgtt
tctggggctgatgaccgccaaatcaaactgtggagaatgaatgacacaaaggcatgggag
gttgatactctcaggggccacatgaacaatgtgtcatgtgtcatgttccacgcgaagcag
gacatcattgtgtccaactcagaagataaaagcatccgcatttgggatgccactaagaga
accggcatccagacattcaggcgggagcatgaccgcttctggattcttgctgcgcaccct
gaaatgaatcttcttgctgctggtcatgacagtggcatgattgtttttaagttggagagg
gaacgcccggctttcagtgtgagtggtgatacagtgttctatgttaaggaccggttcctc
cggtattacgaatactccacacagaaggaggttcaggtagctccaatcagaaggcccgga
acagtcagcttgaatcagtcaccaagaacattgtcatatagtccaactgagaacgcaatc
ttgatatgttctgatgtggatgggggctcgtatgagctgtacattgtgcccaaggactct
gccgggaggtctgattatttgcaggaggcaaggaagggagctggtagttctgcagttttc
atagcccgcaatcggtttgcagtgctggagaagagcagcaacaatgttttggttaagaac
cttaagaatgagattgtgaagaaaacctctcttcctattgcaacagatggaatttattac
gctgggactggcaacatattgtgcaaagctgaagacagggtggtaatctttgatctgcag
cagaggcttgttctcggcgaactccaggcaccttctgttaagtatgtagtttggtccagt
gatatggagtgtgttgcactgctgagcaagcatgccattatcattgcaaacaagaagctt
gtccaccgctgcacgcttcatgaaaccatacgtgtgaagagtggtgcctgggatgaaaat
ggtgtattcatatacaccactctgaaccatatcaagtattgtcttcctaatggtgatagt
ggcatcatcagaacacttgatgtcccaatttacataaccaaagttattgggaataacatc
ttctgtatagaccgtgatggaaagaacaagttgataacggttgatgcttctgaatacatt
ttcaagcttgcccttttccggaaacgctatgaccatgtcatgagcatgattaagaactcg
cagctatgtgggcaagctgtgatttcttatttgcaacagaaagggtttccagaagtcgcc
ctccactttgtaaaagatgagaagacaagatttaacctggctcttgaaagtggaaatatc
cagattgctgttgcttcagcaaaggagcttgatgacaaggatcactggtacaggttggga
attgaggctctgaggcagggaaatgttggtatagttgagtatgcataccagcggactaag
aattttgacaggcttgcttttctgtatctcataacaggttatttggacaaggtgggcttt
atgtgtaagatagctgggcagaataacaatttcatgggccagttccacaacgcactttat
ctcggggatgtacggaagcgagttgaaatcttggagaatgcagggcagctagctcttgcg
tatgtaacagctgtcactcatgggctcacggaaatcgctgataggctttctgctgagttg
ggggagaatgtcccttctgtatcagatgggaaaactagctcactgttgattccgcctgct
cctcttatgtcttgtggtgactggcctttgttgagggtgatgcgtggtatatttgatgct
ggtctagatgctactgggagggcagatcaggaggaagactatgatgatgctggtggtgat
tggggtgatgaagatcttgagattgttgatgtgaacaatgtggtggagaatggagatgtc
gttgaccacaatgaggaagaggaggtgaacgaagaggaaggtggctgggaccttgaagat
ctggaattgccaccagaggcagaaacaccaaaggctgttggtgtggcccgctccactttg
tttgtggctccaacgccaggtatgcctgtcagccaaatttggacgcagaagtcttccctt
gctggggagcatgctgcagctggcaactttgacactgcgatgcggctgcttagccgccag
cttggaataaaaaattttgctcctctgaagccattgttcctcgatgcactcatgggcagc
cataccttcctgcgtgcatttgcaagtgctccggttatacctgttgctgttgagaaagga
tggagtgaatctgctagtcctaatgtgaggggcccacctgcacttgtgtttaccttctca
caaatggatgacaagcttaaggctgcatataaagccacaaccgagggtaaattcccggag
gcactgaggcagttcctgagcatcctgcacacgatcccgctccttgtggtggactcgcgg
agagaagtggatgaggtgaaggaattgattcagatagcgagggagtatgtccttggtctt
aagatggaagttaaaaggaaggagctgaaagaagaccccatcaggcagcaggagctggct
gcctacttcactaattgcaacctgcagaaggtccacacgcggcttgtcctgactagcgct
atggggctttgcttcaagggtgggaactatgctactgcagcgaattttgcgcggatgctt
ctggagaacagccctaatgaggcccaggcaaagaaggctcggcaggttgtgcaggcctgt
ggggataggaaagatgggcgccagctgaactatgactttagaaatccatttgtggtgtgt
ggggcaacctttgttccaatataccgtggacagaaggatgtttcttgtccgtactgtgga
tctcggttcatgccctcggtggaaggtgagctgtgtagcatatgcgagctctcagtggtt
ggtgcggatgcttcaggcctcctctgctctcctacacaatcgagataa
DBGET
integrated database retrieval system
