Setaria viridis (green foxtail): 117854879
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Entry
117854879 CDS
T07951
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117854879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117854879
03012 Translation factors [BR:
svs03012
]
117854879
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117854879
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117854879
Translation factors [BR:
svs03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117854879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
nSTAND3
AAA_19
PhoH
ATPase
AAA_16
Motif
Other DBs
NCBI-GeneID:
117854879
NCBI-ProteinID:
XP_034593032
LinkDB
All DBs
Position
5:6179958..6190262
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AA seq
1240 aa
AA seq
DB search
MLLSSVLRGRVRNFRRPRPLTMPTPLFLSRNPNPSPGATNPHLPSDPRSAAMSTSGVYVP
PMRRLRSVIASTNGSLAPPPSAAAQAQQAARTPEWRMDERSPSPPSPPQTRRRDMPPLPR
PPQPEHFRQQSAGYARYAYDDFSEDDSDREMDRTSVSSKGASTLDNVDEWKWKLHMLLRN
DDEQEIVSRERKDRRDFEQLAQLAERMGLHSRQYSRVVVFSKVPLPNYRSDLDDKRPQRE
VSIPAGLQREVDALLGDYIARKRTNSGNFPSAAFSRSSSTDSFATDEGFFDQQDNQTSTS
AVMERIQRRKSLQLRNQQAAWQESNDGQSMMEFRRSLPAYKEKQTLLEAISQNQVVVVSG
ETGCGKTTQLPQYILESEIDAARGATCSIICTQPRRISAIAVSERVAAERGEKIGESVGY
KVRLEGMRGRDTRLLFCTTGVLLRRLLVDRNLKGVSHVIVDEIHERGMNEDFLLIVLKDL
LPRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRNHFLEDILEFTGHRLTPYN
QIDDYGQEKSWKMQKQGLRKRKSQIASAVEDAVETADLRNYSPRTRDSLSCWNPDSIGFN
LIENVLCHICQKERSGAVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSE
QKLIFDKPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWIS
KASARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLRLGSIS
EFLSRALQSPESLSVQNAIEYLKVIGAFDQNEDLTVLGKHLSMLPVEPKLGKMLIFGAIF
NCLDPILTIVSGLSVRDPFLTPFDKKDLAESAKLQFSCRDYSDHLALVRAYEGWREAERD
RAGYDYCWKNFLSVQTLKAIDSLRRQFLFLLKDTGLVDENMTVCNKWSRDENLVRAVICA
GLYPGVSSVVNKEKSISLKTMEDGQVMLYSSSVNGKEAKIPFPWLVFNEKVKVNSVFLRD
STAVSDSILLLFGGNIKQGGLDGHLKMLGGYLEFFMNRDLASTYLSLKNELENLIHCKLQ
NPRMDIQTSEELLSAIRLLVSEDPCSGRFVYGRQEQRSKKAKTMLSSSSMNGGGGNGGEN
AKNQLQTLLTRAGHSNPSYKTKQIKNSLFRSTVEFNGMQFVGQPCANKKLAEKDAAAEAL
NWLTGDGGGAAADTRDSRNADPMSVLMKPPRRRRHSHRRS
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgctcctgagctccgtcctgcggggtcgcgtccgcaacttccgccggccccgccccctg
accatgcccacccctctcttcctctccagaaatcctaatcctagccccggcgcgactaac
ccccacctcccatcggacccccggtccgccgccatgagcaccagcggagtctacgtgccg
ccgatgcggcggctccgctcagttatcgcgtccaccaacgggagcctcgcgccacctcca
tccgccgcggcgcaggcccagcaagcggcgcggacgccggagtggcggatggacgagcgc
tcgcccagccccccatctccgcctcagacgcggcggcgcgacatgccacccctcccgcgg
ccaccccagccagagcatttccggcagcagagcgctgggtatgctcgctacgcctacgat
gatttctctgaggatgattcggatcgggagatggaccgtacatcggtttcaagcaagggt
gcatccactttagataatgttgatgaatggaaatggaaactgcacatgcttctccgtaat
gatgatgaacaagagattgtctcaagggaaagaaaggataggcgagattttgaacaactt
gcccaactggctgagcgaatgggtttgcacagccgtcagtattctagagttgttgttttc
agtaaggttccactgcctaattatagatcagatcttgatgacaaaagacctcaaagagag
gtatctatacctgctggtttgcaaagagaagttgatgctttgcttggagactacattgca
cgaaagagaacaaacagtgggaacttccctagtgctgccttctcaaggtcaagcagcaca
gacagttttgcaactgatgaaggcttctttgatcaacaagataatcaaacttccactagt
gctgtgatggagagaatccaaagaaggaaaagcctacagttgcggaaccagcaggctgct
tggcaggaatcgaatgatggtcaaagcatgatggagtttcgtcgcagtcttcctgcttat
aaagaaaagcaaactttattggaagctatatcacagaatcaggttgttgtagtttcaggt
gagactggctgcggtaagactacacaactaccgcagtacattttagaatctgaaatcgat
gctgctcgtggtgctacatgtagtattatttgcactcaaccaagaagaatatcagcaatt
gctgtgtctgaaagagttgctgctgaaaggggcgagaaaattggtgaatcggttggctac
aaagttcgactggaaggcatgagaggaagggatacacgtcttcttttctgcaccactgga
gtcctattgcggagattgctggtggacagaaacttgaaaggtgttagccatgttattgtt
gatgaaatccatgagaggggcatgaacgaagattttcttcttattgtcttaaaggacctt
cttccacgccgtcctgagctaaggcttatattgatgagcgcaacccttaatgctgagctc
ttctcctcgtactttggtggagcacccatgatacatatacctggatttacatatcctgtt
cggaatcatttcctggaagacattcttgaattcactggacatcgattgactccttacaat
caaattgatgactatggccaagaaaaaagttggaagatgcaaaaacaaggtctacgaaag
aggaagagccaaatcgcttctgctgtggaagatgcggttgaaactgctgatttgaggaac
tacagtccgcgaactcgtgattctctatcatgttggaatcctgattcaatcggttttaat
ttaatagaaaatgtcttatgccatatttgtcaaaaggaacgatctggtgctgttcttgta
tttatgactgggtgggatgacattaatgcactaaaagagcagctgcaagcaaatccatta
cttggagatccaagcaaagttttgctgctcgcttgtcatggctctatggccagttcagag
cagaaattaatatttgataagcctgagcctggagtaaggaaaatagttcttgccaccaat
ttggctgaaactagtattactatcaacgatgtagtttttgttgttgactgtggcaaagca
aaagagacatcttacgatgcactgaataatactccctgtttgcttccgacatggatatcc
aaggcttctgccagacaaagacgaggacgagctggccgagtccaaccaggggagtgctac
catctttatccacgatgtgtatatgatgcatttgctgactaccagttaccagaacttcta
cgaactcctctccagtccctgtgtttacaaataaaaagcttgaggctgggaagtatatca
gaatttttatccagagctttgcaatcaccagaatctctatcagtacaaaatgccattgaa
tatcttaaagtcattggagcatttgatcagaatgaagacttgacggttcttggaaagcac
ttgtctatgcttccagttgagcctaagttaggcaagatgcttatttttggggctattttt
aattgtctggacccaatattaacaatagtttctggacttagtgttagagaccctttcttg
actccctttgacaagaaagatctggctgagtcagctaaactacagttttcatgccgggac
tacagtgatcatcttgcacttgttcgtgcatacgaaggatggagggaggctgaacgagat
cgtgctggctatgactactgctggaaaaattttctttcggtgcaaaccttgaaagcaata
gattcccttcggcgtcagttcctctttcttctgaaggatactggtttggttgatgaaaac
atgactgtgtgcaataaatggagccgtgatgaaaatctagttcgagcagtaatttgtgca
gggctatatcctggtgtttcctctgttgtgaacaaggagaaatcaatttccctcaagaca
atggaggacggacaggttatgctttattcgagttcggttaatggtaaagaagccaagatt
ccattcccctggctagttttcaatgagaaggtgaaggtgaattctgttttcctccgggat
tcaactgctgtatctgattctatactgttgctattcggaggcaacataaaacaagggggc
ttggatggccacttaaaaatgcttggaggttatctggaattcttcatgaatcgtgatctt
gcatcaacttatttgagtctaaagaatgagctcgagaatttaatccattgcaagctccaa
aacccaaggatggacatccaaacgagtgaagaattgctatcagccatccgtttgctggtc
agtgaggacccatgcagcggccggtttgtttacggccgacaggagcaaagatcaaagaaa
gcaaagacgatgctctcatcatcctccatgaacggcggaggtggcaatggtggtgagaac
gccaagaaccagctccagaccctcctgacccgggccgggcacagcaacccgtcctacaag
acaaagcagatcaagaacagcctcttcaggtccactgtcgagttcaatggcatgcagttc
gtcgggcagccgtgtgcgaacaagaagctcgcggagaaggatgctgccgcggaggccctg
aactggctgacaggagatggtggaggtgcggccgctgacacgagagactcccgaaatgcg
gatcccatgtccgtgctgatgaaaccgccgcgcaggcggcggcatagccataggaggagc
tga
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