Setaria viridis (green foxtail): 117854892
Help
Entry
117854892 CDS
T07951
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117854892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117854892
03009 Ribosome biogenesis [BR:
svs03009
]
117854892
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117854892
Spliceosome [BR:
svs03041
]
Complex A
U1 snRNP components
U1 related factors
117854892
Complex B
117854892
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
Pre-60S particles
Helicases
117854892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117854892
NCBI-ProteinID:
XP_034593046
LinkDB
All DBs
Position
5:complement(24745363..24750454)
Genome browser
AA seq
806 aa
AA seq
DB search
MSGSSGRAAPRYAPDDPSLPKPWRGLVDGTTGYLYYWNPETNVTQYEKPMPPEDQLPPPP
PPLPPPPPRSRDRRDRSRSRSRTPPRRDHRDRDRDRDRDRRHDEHASSKSASSHHHPAPA
AVADDPSTEAYRRRHEITVTGDNVPAPMTSFEAGGFPPEILKEIQRAGFASPTPIQAQSW
PIAMQSQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNSTRNGPTVLVLAPTRELATQILDE
AVKFGRSARISCTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRVSLKQVSYLV
LDEADRMLDMGFEPQIRKIVKEIPHRRQTLMYTATWPKEVRRIADDLLVHPVQVTIGSVD
ELVANSAITQHVEVITPSEKLRRLEQILRSQDSGSKVLIFCTTKKMCDQLARTLTRQFGA
SAIHGDKSQSEREKVLNHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHR
IGRTGRAGATGVAYTFFCDQDSKYAADLIKILEGANQKVPRDLEDMASRGGGRGRKRNRW
ASRPDRGGSRSELDSRYSGRDASGRSPRGGRGRDDYGGRGRHDYGETDGRSRRSARGRSR
SRSRSDSRSRSPSPKRARRHEATRSRTKSRSRSRTKSRSRSRSRSYTRNRRASRSRSRSP
VGSRRYETAAAVSGSARPNSGHSEHKSPPRSQSGNDHHVNHSEDDHHMEDGKMEKVDLDR
SPSPQDDKSAPYSPVYNGKASGSKSPNGQPDGNAKSVEASEKPNPASPVRHSKSREDEEE
GVIDEDGEIAEDDPRSSAAATQNGDN
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggctcatcagggcgcgcggccccgcggtacgcgccggacgacccgtcgctgccc
aagccgtggcgcggcctcgtcgacggcaccaccggctacctctactactggaacccggag
accaacgtcacgcagtacgagaagcccatgccccccgaggaccagctcccgccgcctccg
cccccgctgcctcccccgcctccccggagccgcgaccgccgcgacaggtccagatcccgc
tcccgcaccccgccccggcgcgaccacagggaccgcgaccgcgaccgtgatcgtgacagg
cgccacgacgagcacgcgtcctccaagtcggcgtcttcccaccaccatcctgctccggcc
gccgtcgccgatgatccgtccaccgaggcgtaccgccgccgccacgagatcactgttacg
ggggataacgtgccggctccaatgacttcatttgaggctggtggctttccgccagaaatt
ctgaaggagatacagcgtgctggatttgcaagcccaacacctatccaagcccagtcatgg
ccaatcgccatgcagagccaagatgtagtagctattgcgaagactggatctggcaaaact
cttgggtatctacttcctggattcatgcatatcaagcgcctgcagaacagcacaaggaat
ggtccaacagtgctagttttggcaccaacaagggaacttgcaacacagattctggatgaa
gctgtgaagtttgggagatcagcgagaatttcttgcacgtgcctatatggtggtgctcct
aaaggtccacagttgagagatttagatagaggagttgatgttgttgttgcaacacctgga
aggttaaatgacattctagagatgagaagggtaagccttaagcaagtgtcgtatcttgtt
ctggatgaggctgaccgtatgttggacatgggctttgagccacaaatacggaagatagtg
aaagagatacctcaccgtcgtcaaacacttatgtacactgctacttggccaaaggaagtc
cggaggattgcagacgatcttcttgttcatcctgtccaggtgacaattggaagtgttgat
gaacttgttgctaatagcgctattactcagcatgtggaggtgataacaccctcagaaaag
cttcgacgtctggaacaaatattgcgatcccaggattcaggttcaaaagtattaatattt
tgtaccaccaagaagatgtgtgaccaacttgcaaggacactcaccaggcagtttggagct
tcggccattcatggcgataagtctcaaagtgaaagagagaaggttctgaatcattttcga
tctgggaggtctcctattttggttgcaacagatgttgctgcgcgtggtttggacatcaaa
gatatcagggttgtgatcaactatgacttccccactggtgttgaagactatgttcacagg
attggcaggacaggaagggctggagccactggtgtcgcatatacatttttctgtgatcag
gattcaaaatatgctgctgacctcatcaaaatcctggaaggggcaaaccaaaaggtaccc
cgtgatttagaggacatggcttctcgtggtggtgggcgaggtaggaagaggaaccgttgg
gcatcccgcccagacaggggtggttcacgctctgaactggattctaggtacagtggcaga
gatgcctctgggagatcaccacgtggcggtcgtggaagggatgattatggtggtcgtggc
aggcatgactatggtgaaactgatgggcgatctcgcagatctgctaggggtcgcagtaga
agccgtagcagaagtgacagtagaagccgtagcccaagtcctaagagggcacggcgtcat
gaggctacacgtagcaggaccaagagtcgcagtcgaagcaggactaagagtcggagcagg
agcaggagcaggagctatactagaaaccgccgtgctagccgcagcaggagccgtagtcct
gttggtagtcgtaggtatgaaacagctgctgctgtctctgggtctgctcggcctaactca
gggcactcagagcacaaaagccctccaaggtcccagtctgggaatgaccaccatgtgaac
cactctgaggacgaccatcacatggaagatgggaagatggaaaaggttgatcttgatcgc
tcgcccagcccgcaagatgacaaatctgctccttatagtcctgtgtacaatggcaaagcc
agtggttcaaagagccccaacggtcagccagatggtaatgccaaatctgtcgaagcttct
gaaaaacctaaccctgcatctcctgtacgccacagcaagagcagagaggatgaggaggaa
ggtgttatagatgaggatggggagatagctgaggatgatcctcgatcaagtgctgcagct
acgcagaatggtgataactga
DBGET
integrated database retrieval system
