Setaria viridis (green foxtail): 117855058
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Entry
117855058 CDS
T07951
Name
(RefSeq) putative E3 ubiquitin-protein ligase SINA-like 6
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117855058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117855058
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117855058
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
117855058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_ZnF
Sina_RING
LPAM_2
Motif
Other DBs
NCBI-GeneID:
117855058
NCBI-ProteinID:
XP_072149996
LinkDB
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Position
5:complement(6478082..6479646)
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AA seq
285 aa
AA seq
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MGSKRPRQVLITGCGRKGPAVFAPRGQAETAAATSQHRAEKITVTLDADLLQCCVCSGPL
TTPLFQCTKGHISCSDCCTDVALDDQSECLMCREPETATRCRAMERVLAGLSVPCAFRQH
GCAEMIPYGGKQAHEASCHYAPCHCPIPGCAGYAGKSLAVHVGVDHPDVHRTRVRPDCLT
PLRMRAFEQARVVLLGHGCAEFLLVVGMDVPSGRSLSLVGLMDEQFDEFKYRIEVVGKDG
VLALFGQAARVDRLARPYHASAFLFVPNAIWDSYPEDIPVFIHLK
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgggctcgaagaggcctaggcaggtgttgataacagggtgcgggaggaagggtccggcc
gtgtttgcacctagggggcaagctgagactgcagctgcgacgagccaacaccgagcggag
aagatcactgtcaccctcgatgccgacctgctgcagtgctgtgtttgttccggtccattg
accacgcccctttttcagtgcaccaaaggccacatctcatgttcagattgctgcacggac
gtggcgctggatgaccagtccgagtgcctgatgtgccgcgagccggagacggccacccgc
tgccgcgccatggagcgcgtcctcgccggcctgtccgtgccgtgcgcgttccggcagcac
gggtgcgccgagatgatcccctacgggggcaagcaagcccacgaggcgtcctgccactac
gccccctgccactgccccatccccggctgcgctggctacgccggcaagtccctggccgtc
cacgtcggggtcgaccaccctgacgtgcaccgcacccgcgtcaggccggactgcctcacg
ccgctgaggatgcgcgcgttcgagcaggcccgcgtggtgctgctcggccacggctgcgcg
gagttcctgctcgtcgtcggcatggacgtgccgtcgggccgctcgctgtccttagtgggg
ctcatggacgagcagtttgatgagttcaagtacaggatcgaggtggtcggcaaggacggc
gtgctcgcgctgttcggtcaggccgcgcgcgtggatcggctggccaggccgtaccatgcc
agcgccttcctgttcgtcccgaacgccatctgggactcttatccggaggacatccccgtg
ttcatccacctgaagtga
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