Setaria viridis (green foxtail): 117855077
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Entry
117855077 CDS
T07951
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
svs03015
mRNA surveillance pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117855077
09122 Translation
03013 Nucleocytoplasmic transport
117855077
03015 mRNA surveillance pathway
117855077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117855077
03041 Spliceosome [BR:
svs03041
]
117855077
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117855077
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117855077
Spliceosome [BR:
svs03041
]
Complex C
Other components
EJC/TREX
117855077
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117855077
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
117855077
NCBI-ProteinID:
XP_034593242
LinkDB
All DBs
Position
5:complement(24715731..24721036)
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AA seq
429 aa
AA seq
DB search
MMVEAKDNEVYEEDLVDYEEEVENVADGVPTNGSADVVKKGYVGIHSSGFRDFLLKPELL
RAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAAL
VLCHTRELAYQICHEFERFSKYLPELRVAVFYGGVNIKNHKDLLKNECPHIVVGTPGRIL
ALARDKDLPLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP
VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSV
SRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVN
IVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQ
IDTSTYMPS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgatggtggaggcgaaggacaacgaggtgtacgaggaggacctcgtcgactacgaggag
gaggtagagaatgtcgccgacggcgtccccaccaacggctccgccgatgtcgtcaagaag
gggtacgtggggatccacagctcggggttcagagacttcctgctcaagccggagcttctc
cgtgccatccaggactgcggatttgagcatccttccgaagtgcaacatgaatgcatccct
caagccattcttggaatggatgtcatctgtcaagcaaaatctgggatgggtaagactgcg
gttttcgttctctcaactcttcagcagattgatcctgttgctggccaagtagctgcgctt
gtgttatgccacacaagagagttagcttaccagatttgccatgaatttgagaggtttagc
aaatacctgcctgaattaagagtcgctgtcttctatggtggagttaacataaagaatcac
aaggatctattgaagaatgaatgcccgcatattgtggttggcacacctggaaggatactt
gctctagctagagataaggaccttccgttgaagaacgtgaggcatttcattcttgatgaa
tgcgacaagatgcttgaatcacttgacatgcgtagagatgtccaggagatcttcaaaatg
actccccatgataagcaagtgatgatgttttcagcaaccctcagcaaggaaattcgtcca
gtttgcaagaaattcatgcaagatcctatggaaatttatgttgatgacgaggctaaactg
acccttcatggtctagttcagcactacatcaaattaagtgaggcagagaagaatcgaaag
ttgaatgatctcttagatgcgctcgatttcaatcaagttgtgatatttgtcaaaagtgtt
agtagagctgcagagctgaacaagttgctctgtgagtgcaatttcccctcaatctgcata
cattctggaatgacacaggaagagaggttgacccgatacaagaacttcaaggaaggacac
aagaggattcttgtggctaccgatttggttggtaggggaattgatattgagcgtgtcaac
attgtcgtaaactatgatatgccagattctgctgatacctacttgcatagggttggtcgg
gctggccgttttggcactaagggacttgcaataacctttgtttcttctgcatctgattct
gatgttctcaatcaagtgcaagaaaggtttgaggttgacataaaggagctgcctgagcag
atagacacttcaacatacatgccatcttga
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