Setaria viridis (green foxtail): 117855243
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Entry
117855243 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14306
nuclear pore complex protein Nup62
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117855243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117855243
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117855243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
SGT1
HEF_HK
COG3_N
Flagellar_rod
Motif
Other DBs
NCBI-GeneID:
117855243
NCBI-ProteinID:
XP_034593440
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All DBs
Position
5:complement(41166262..41173286)
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AA seq
754 aa
AA seq
DB search
MATSFGFGGGSAAAGSTASSPFSFSSTPSPFSFSQPAAASSPAPAFGSSPFSSSSAAASS
APTFGSSLFGASPAAAPASAAASSPFGFGSTGFSFGQATAAASSVASAPSLFRATPAASS
AGTTPSLFGAATSATSSPGLFGAASAPASSPGLFGASATGSATTTPGLFGATTSAATTPG
LFGATSAAATTPNLFGATSAAATTPSLFGAASSAASTPSLFSGASTGFGFGSSASGSTTT
TAAASAPAFGFSFSSGAAVSSTPSTTASAPALGFGGATGSSLFASTTSAPLFSTTNASSP
APAATTTPSFGFSASPATTTSGPSFGFTPSPASATTGSAAPSLFSSASSAPAFAFAKSTS
ATPTTPVSLATSQAAPAPSLFSNTSAAGSTSATTSGFSFVSSSAASTPTLASVSVTGAST
VASATAAAATSGSLFPTASTSGFSFSVAPSSSSAAAATATTTTVTSASTSAGMTTTSPLT
GTTGFPSFNLQTTTPASTSSSFGVSNTAASTSATSTSTSQATSAAVQASSTGAATTTAIT
PAASQAPKLPSEIVGKSVEEIIRDWNNELQDRTAKFRKHATAIAEWDRRILQNRNVLIRL
EAEVAKVVETQTGLERQLELIETHQREVDKALQGMEEEAERIFQDERVLLREDEAASARD
TMYEQAEVVEHELQHMTEQVKSIIQTMNATQGAELEAADSMTPFDVAVRILDNQLRSLMW
IDEKVNEFSGRIQRLPNNSASAERDSGIPRFWLS
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctccttcggtttcggcggcggctccgcggccgcgggctccaccgcctcctcc
cccttctccttctcctccaccccatcccccttctccttctcccagccggcggcggcctcc
tcccccgcccccgccttcggttcctctcccttctcctcatcctccgccgccgcctcctct
gcccccactttcggctcctccctgttcggggcctcgcccgccgccgcgcccgcctctgct
gcggcctcctcccctttcggcttcggatccaccggattctcgttcgggcaagccaccgca
gccgcctcatcggtcgcgtcagcgccatccctcttccgggcaacgcctgccgcatcctcc
gccggaacaacccctagcttattcggcgctgccacctccgccacaagcagccccggcctc
ttcggcgctgcctctgcccccgcaagcagcccgggcctcttcggcgcgtccgccaccggc
tccgcgacgactaccccgggcctgttcggcgctaccacctccgcggcaaccactccgggc
ctattcggggccacctccgccgcggcgaccacaccgaacctattcggggccacctccgcc
gcggcgacgacacctagtctgttcggcgccgcctcctccgctgcgtccacgccaagcctc
ttctctggagcctccacgggcttcggctttggctcgtcggcgtccggctccaccactacc
acggccgccgcctcggcaccagcatttggcttttcattcagctcaggggcggccgtgtca
agcactccctccaccacggcatcagcaccggcattagggtttgggggcgccacgggctcg
tcgctgttcgcatccaccacttctgcaccactcttcagcaccaccaacgcctcttctcca
gcgcctgctgccaccaccactccatcctttggcttctctgcctcgccagcaacaacaaca
tccggcccgtcctttggctttacgccatcaccagcgagcgcaacgacagggagcgcggct
ccttccttgttctcttctgcttcgtcggcccctgcctttgctttcgctaagagcacatct
gccacgcctaccacgccggtctccttggccacttcgcaggctgcacctgcaccatcactg
ttctctaataccagtgcagcaggtagtacgtctgccactacgtctggcttctcctttgtt
tcatcttcggcagcttctacaccaactttagcttctgtctctgtaactggtgcatccact
gtggcatcagctactgcagctgctgcaacatcgggatcgttgttcccaactgcttctacc
agcggtttcagtttttcagtagcaccatcatcgtcatcagcagcggcagctacagccact
accaccactgtcacaagtgcatctacatctgcaggcatgaccaccacgtctcctttgact
ggaacaacagggtttcctagttttaatcttcaaacaactacgccagcttctacctcatcg
tcatttggtgtttctaatacagctgctagcacatcagccaccagcaccagcacaagtcag
gcaacttccgcagctgttcaagctagcagcacaggtgctgctactactacagctatcact
ccagcagcttcccaagcacctaagctaccatcagaaattgttggcaaaagtgtggaggag
attattagggactggaacaatgagcttcaagaccgaactgcgaaattcaggaaacatgcc
actgcaatagctgaatgggacaggagaattctgcaaaacagaaatgttcttatcaggctt
gaggctgaggtggctaaagttgttgaaacacaaacaggcttagagcgtcaacttgagttg
atagaaactcatcagcgagaggtagacaaggctctccagggtatggaggaggaagctgaa
cgcatattccaggatgaacgggtgttgcttcgtgaagatgaggctgcttcggcaagagat
acaatgtatgagcaagcagaagttgtggagcatgaattgcaacatatgacagaacaagta
aaatccatcattcagactatgaacgctactcagggtgctgagcttgaggccgctgatagt
atgacaccatttgatgttgctgtccgtatactggataatcaactgcggtccctgatgtgg
attgatgagaaggttaatgagttctcaggcagaatacagaggctgcctaacaacagtgct
tcagctgaacgcgactctgggattcccaggttttggttaagctga
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