KEGG   Setaria viridis (green foxtail): 117855243
Entry
117855243         CDS       T07951                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K14306  nuclear pore complex protein Nup62
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    117855243
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:svs03019]
    117855243
Messenger RNA biogenesis [BR:svs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     117855243
SSDB
Motif
Pfam: Nsp1_C Nucleoporin_FG SGT1 HEF_HK COG3_N Flagellar_rod
Other DBs
NCBI-GeneID: 117855243
NCBI-ProteinID: XP_034593440
LinkDB
Position
5:complement(41166262..41173286)
AA seq 754 aa
MATSFGFGGGSAAAGSTASSPFSFSSTPSPFSFSQPAAASSPAPAFGSSPFSSSSAAASS
APTFGSSLFGASPAAAPASAAASSPFGFGSTGFSFGQATAAASSVASAPSLFRATPAASS
AGTTPSLFGAATSATSSPGLFGAASAPASSPGLFGASATGSATTTPGLFGATTSAATTPG
LFGATSAAATTPNLFGATSAAATTPSLFGAASSAASTPSLFSGASTGFGFGSSASGSTTT
TAAASAPAFGFSFSSGAAVSSTPSTTASAPALGFGGATGSSLFASTTSAPLFSTTNASSP
APAATTTPSFGFSASPATTTSGPSFGFTPSPASATTGSAAPSLFSSASSAPAFAFAKSTS
ATPTTPVSLATSQAAPAPSLFSNTSAAGSTSATTSGFSFVSSSAASTPTLASVSVTGAST
VASATAAAATSGSLFPTASTSGFSFSVAPSSSSAAAATATTTTVTSASTSAGMTTTSPLT
GTTGFPSFNLQTTTPASTSSSFGVSNTAASTSATSTSTSQATSAAVQASSTGAATTTAIT
PAASQAPKLPSEIVGKSVEEIIRDWNNELQDRTAKFRKHATAIAEWDRRILQNRNVLIRL
EAEVAKVVETQTGLERQLELIETHQREVDKALQGMEEEAERIFQDERVLLREDEAASARD
TMYEQAEVVEHELQHMTEQVKSIIQTMNATQGAELEAADSMTPFDVAVRILDNQLRSLMW
IDEKVNEFSGRIQRLPNNSASAERDSGIPRFWLS
NT seq 2265 nt   +upstreamnt  +downstreamnt
atggcgacctccttcggtttcggcggcggctccgcggccgcgggctccaccgcctcctcc
cccttctccttctcctccaccccatcccccttctccttctcccagccggcggcggcctcc
tcccccgcccccgccttcggttcctctcccttctcctcatcctccgccgccgcctcctct
gcccccactttcggctcctccctgttcggggcctcgcccgccgccgcgcccgcctctgct
gcggcctcctcccctttcggcttcggatccaccggattctcgttcgggcaagccaccgca
gccgcctcatcggtcgcgtcagcgccatccctcttccgggcaacgcctgccgcatcctcc
gccggaacaacccctagcttattcggcgctgccacctccgccacaagcagccccggcctc
ttcggcgctgcctctgcccccgcaagcagcccgggcctcttcggcgcgtccgccaccggc
tccgcgacgactaccccgggcctgttcggcgctaccacctccgcggcaaccactccgggc
ctattcggggccacctccgccgcggcgaccacaccgaacctattcggggccacctccgcc
gcggcgacgacacctagtctgttcggcgccgcctcctccgctgcgtccacgccaagcctc
ttctctggagcctccacgggcttcggctttggctcgtcggcgtccggctccaccactacc
acggccgccgcctcggcaccagcatttggcttttcattcagctcaggggcggccgtgtca
agcactccctccaccacggcatcagcaccggcattagggtttgggggcgccacgggctcg
tcgctgttcgcatccaccacttctgcaccactcttcagcaccaccaacgcctcttctcca
gcgcctgctgccaccaccactccatcctttggcttctctgcctcgccagcaacaacaaca
tccggcccgtcctttggctttacgccatcaccagcgagcgcaacgacagggagcgcggct
ccttccttgttctcttctgcttcgtcggcccctgcctttgctttcgctaagagcacatct
gccacgcctaccacgccggtctccttggccacttcgcaggctgcacctgcaccatcactg
ttctctaataccagtgcagcaggtagtacgtctgccactacgtctggcttctcctttgtt
tcatcttcggcagcttctacaccaactttagcttctgtctctgtaactggtgcatccact
gtggcatcagctactgcagctgctgcaacatcgggatcgttgttcccaactgcttctacc
agcggtttcagtttttcagtagcaccatcatcgtcatcagcagcggcagctacagccact
accaccactgtcacaagtgcatctacatctgcaggcatgaccaccacgtctcctttgact
ggaacaacagggtttcctagttttaatcttcaaacaactacgccagcttctacctcatcg
tcatttggtgtttctaatacagctgctagcacatcagccaccagcaccagcacaagtcag
gcaacttccgcagctgttcaagctagcagcacaggtgctgctactactacagctatcact
ccagcagcttcccaagcacctaagctaccatcagaaattgttggcaaaagtgtggaggag
attattagggactggaacaatgagcttcaagaccgaactgcgaaattcaggaaacatgcc
actgcaatagctgaatgggacaggagaattctgcaaaacagaaatgttcttatcaggctt
gaggctgaggtggctaaagttgttgaaacacaaacaggcttagagcgtcaacttgagttg
atagaaactcatcagcgagaggtagacaaggctctccagggtatggaggaggaagctgaa
cgcatattccaggatgaacgggtgttgcttcgtgaagatgaggctgcttcggcaagagat
acaatgtatgagcaagcagaagttgtggagcatgaattgcaacatatgacagaacaagta
aaatccatcattcagactatgaacgctactcagggtgctgagcttgaggccgctgatagt
atgacaccatttgatgttgctgtccgtatactggataatcaactgcggtccctgatgtgg
attgatgagaaggttaatgagttctcaggcagaatacagaggctgcctaacaacagtgct
tcagctgaacgcgactctgggattcccaggttttggttaagctga

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