Setaria viridis (green foxtail): 117855267
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Entry
117855267 CDS
T07951
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117855267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117855267
03009 Ribosome biogenesis [BR:
svs03009
]
117855267
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117855267
Spliceosome [BR:
svs03041
]
Complex A
U1 snRNP components
U1 related factors
117855267
Complex B
117855267
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
Pre-60S particles
Helicases
117855267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
117855267
NCBI-ProteinID:
XP_034593467
LinkDB
All DBs
Position
5:complement(43726902..43731262)
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AA seq
687 aa
AA seq
DB search
MGQAGGNSSCEDYFSSAGPVAFADLREGPGFFLLYRQTQRAREESAAWVTTNGRNDPVRP
SRTPPRQPNKKHTTASPPAATSRSIPSLTFALELGGDLPLPARPAKLLAPPAKPAPGAMN
PYDVRFVDPSSYHDRRSDLAVAPVVAPPVAMPAANPYAAAYPPVPAASAGGDYPRYGQGG
RGRGGGGRGGGGGYGGGGGYGGGGRGGRGRDGLDTLALPKPDFRSLIPFEKNFYVESPSV
QAMSDADVAQYRRLRDITVEGRDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQGW
PMALKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQIQE
ESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIATPGRLIDLLEAGHTNLRRVTYL
VLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVEALARQFLQNPYKVTIGSA
DLKANHSIQQIVEVISDQEKYPRLSKLLSDLMDGSRILIFFQTKKDCDKITRQLRMDGWP
ALSIHGDKAQSERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINYDFPTTLEDYIH
RIGRTGRAGASGTAFTFFTHANAKFSRNLVKILREAGQVVNPALESMSKSASSSGGGNFR
SRGRGGFGNRGHISGSNSFPLGGRRPY
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgggccaggcagggggaaatagctcgtgcgaggactacttttcctcagctggccccgtc
gccttcgccgacttgcgtgaaggaccgggcttctttctattgtaccgacagacccagagg
gccagagaggaatctgccgcgtgggtcacgacgaacggacgaaacgaccccgtccgtccg
tcccgcacgccaccaaggcaacccaacaaaaagcataccaccgcgtctccgcccgccgcc
accagcagatccatcccctccctcacctttgccctagagctcggcggcgacctccccctc
cccgctcgtcccgccaagctcctcgcccctccggccaagcccgctcccggcgccatgaat
ccctacgacgtccgcttcgtcgatccctcctcgtaccacgacaggcgcagcgacctggcc
gtggctcctgtggtcgctccgccggtcgccatgccggcggcgaacccttacgccgccgcg
tatccgcccgtgcccgcggcctccgctggcggcgactacccgcgctacgggcagggcggc
agaggccgtggtggaggtggcagaggcggtggaggcggctatggaggtggcggtggctat
ggtggtggcggcagaggagggcgcggcagggacgggcttgacacgctcgccctgcccaag
cctgacttccggagcctgataccgtttgagaagaacttctacgtggagtctccttccgtt
caggctatgtcggacgctgatgtggcccagtaccgccgtctccgggatatcaccgttgag
ggccgggatgtgcccaagccggtccgatacttccaggaagccaacttcccagattactgc
atgcaagcaattgccaagtccgggtttgtcgagccgacacctattcaatctcaaggctgg
cctatggctctgaagggtagggacctgattggtatcgctcaaacgggctcagggaaaaca
ttatcttatctgctacctgggttagttcatgttggtgcccagcctcggctagagcaaggt
gatggcccaattgtattaatcctcgccccaacaagagaacttgctgttcaaatacaggaa
gaatctacgaaatttggatcatattcaagaactagaagcacatgtgtctatggtggtgca
cctaagggtccacaaatacgtgaccttagaagaggagttgaaattgtcattgcaactcct
ggccggttgattgatttgctggaagctggtcacacaaacctacgtagagtgacatacctt
gtgctggatgaggcagaccggatgctagatatgggtttcgagcctcaaattcgaaaaata
gttgcacagatccggccagacaggcaaaccttgtattggagtgccacatggcctagagaa
gttgaagccttagctagacagtttctgcaaaatccttacaaggtaacaataggatcagct
gaccttaaagctaatcattccatacaacaaattgttgaagttatttcagatcaggagaag
tatccgagactcagtaagctcttgtctgatctaatggatgggagccgtatcttgatattt
ttccaaacgaaaaaggactgtgataagatcaccaggcaacttagaatggatgggtggcca
gcgttatctatacatggtgataaagctcagtctgaaagagactatgttcttgcagagttt
aagagcggcaagagtcccataatggctgccacagatgtagcagcacgcggtcttgatgtg
aaggacataaagtgtgtgataaattatgattttccaacaactcttgaagactatattcac
aggataggtcgaactggccgtgctggtgccagtggaactgcatttacattcttcacacat
gcaaatgcgaagttctcaaggaatctagtcaagattctgcgggaagctggccaagttgtg
aatcctgcactagaatctatgtccaaatccgcaagttcatctggaggaggcaatttccgg
tcgaggggcagaggtgggtttggtaaccggggtcatatatctggatcaaatagctttcct
ttaggaggaagaaggccatactga
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