KEGG   Setaria viridis (green foxtail): 117855449
Entry
117855449         CDS       T07951                                 
Name
(RefSeq) UBP1-associated protein 2C
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117855449
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:svs03019]
    117855449
   03041 Spliceosome [BR:svs03041]
    117855449
Messenger RNA biogenesis [BR:svs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     117855449
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     117855449
Spliceosome [BR:svs03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    117855449
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 117855449
NCBI-ProteinID: XP_034593696
LinkDB
Position
5:complement(28500301..28503853)
AA seq 450 aa
MDPYSKKRKPDENGAATASPAGGAAALGLTRDDVLRLLEPLSRDQLADIAAAAALVSAHA
LDAVRAAADRDPALRKLFVRGLGWETTSDSLRSIFSAYGDLEEAVVITDKNTGRSKGYGF
VTFRHADSAVLALKEPSKKIDGRMTVTQLAAAGAAGGPSGGAAGSGGAPVADVSLRKIFV
GNVPADMSSERLLAHFASYGEIEEGPLGFDKQTGKFRGFALFVYKTPEGAQASLVDSVKV
IDGHQLVCKLAIEGKKGKQGQSQQSGPGNQQQQQQMLQGGPQDMQGGLGLGPGPQMGAQY
GGPGSGLSSFGAFGGVGGGFGGPNPYGNMPSSMGGGGAGGLGSMGGQVPTGLGGAGPGAF
GPGGLGGGSFGGSSQFGAGGMGAYGGLGMGGGSMYRMQQGGGGLPAGAFGEGGNYPLPGS
GFRGQDPQGGMSPGPGGRAPPMYPNVPPYF
NT seq 1353 nt   +upstreamnt  +downstreamnt
atggatccctactccaagaagcgcaagcccgacgagaacggcgccgccaccgcctccccc
gccggcggggccgccgcgctgggcctcacccgcgacgacgtcctccgcctcctcgagccg
ctctcccgggaccagctcgccgacatcgcggctgccgccgcgctcgtctcggcgcacgcg
ctcgacgccgtgcgcgccgccgccgaccgggacccggccctccgcaagctcttcgtgcgg
gggctcggatgggagaccacctccgactcgctccgctccatattctccgcctacggcgac
ctcgaggaggccgtggtcatcaccgacaagaatacggggcggtccaagggctacggcttc
gtcaccttccgccacgccgactctgccgtcctcgcgcttaaggagccctccaagaagatc
gacggccgcatgaccgtcacgcagctcgctgccgctggtgcggccggcgggccgtctggt
ggggccgcgggcagcggtggtgctcccgtggcggatgtctccctccgaaagatctttgtt
ggcaacgtccctgccgacatgtcgtctgagcgcctccttgcgcactttgcctcgtatggt
gagatcgaggaggggccgctgggttttgacaagcagactggcaagttccgtggctttgcc
ctctttgtgtacaagacgcctgagggtgctcaggcctcgttagtggactcggtgaaggta
attgacggccaccagcttgtatgcaagctcgcgatagaggggaagaagggcaagcagggg
caatcacagcaatccgggcctggcaaccagcaacagcagcagcagatgttgcagggtggt
ccacaggacatgcagggagggcttgggcttgggcctggcccacagatgggagcacagtat
ggtggccccgggagtggactgtcatcgtttggggcatttggtggtgttggcggtgggttt
gggggtccaaacccttatggaaacatgccatcttctatgggtggaggaggcgcaggtggt
ttaggctctatgggaggccaggtgcctaccggtttgggtggtgctgggcctggcgcattt
gggcctggtggattgggtggtggctcgtttggtggatcgtctcagtttggtgctggtggg
atgggggcttatggcggccttggaatgggtggaggttccatgtaccgcatgcaacaggga
ggaggtgggctgcctgcaggtgcctttggtgaaggagggaactacccccttccagggtct
ggtttccgtggccaggaccctcaaggtgggatgtcacctgggccaggtggcagggctcct
cctatgtatcccaatgtgccgccttacttctaa

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