Setaria viridis (green foxtail): 117855604
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Entry
117855604 CDS
T07951
Name
(RefSeq) THO complex subunit 7B-like
KO
K13176
THO complex subunit 7
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117855604
09122 Translation
03013 Nucleocytoplasmic transport
117855604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117855604
03041 Spliceosome [BR:
svs03041
]
117855604
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117855604
Spliceosome [BR:
svs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117855604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THOC7
WHD_LYAR
Motif
Other DBs
NCBI-GeneID:
117855604
NCBI-ProteinID:
XP_034593882
LinkDB
All DBs
Position
1:29764575..29770067
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AA seq
157 aa
AA seq
DB search
MAVDTYSCLHKGALSCGNRFCKGIPSPGAGISTAATRTVKRVPAGVGHTPQEDDAIIKHR
LLTRTTTTRGEPPLKKLQKKFMSFATEIEKDADNTSDCERLYKAFLQEINTFELPLLKSK
AVVDANIREKESFNELQVEIERQILQVRSNLPFVYMW
NT seq
474 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcgacacctactcctgcctccacaagggcgccctctcctgcggcaaccgcttc
tgcaagggcatcccctcgccgggcgccggcatcagcaccgcggccacccgcacggtgaag
cgcgtgcctgctggtgtcgggcatacaccccaggaggacgatgcgatcattaagcacagg
cttctgactaggacaactactaccaggggtgaaccaccactaaagaagcttcagaagaag
ttcatgtcctttgccactgagattgagaaggatgcagataacacaagtgactgcgagaga
ctgtacaaagccttcctacaggaaattaacacctttgaactgcctcttctgaaaagcaag
gctgttgttgatgcaaacattagggagaaggagagctttaatgagttgcaggttgagatt
gagcgacagatcttgcaagtaagaagcaatttgcccttcgtctacatgtggtga
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