Setaria viridis (green foxtail): 117855614
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Entry
117855614 CDS
T07951
Name
(RefSeq) nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117855614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117855614
03036 Chromosome and associated proteins [BR:
svs03036
]
117855614
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117855614
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117855614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
117855614
NCBI-ProteinID:
XP_034593889
LinkDB
All DBs
Position
5:138627..144132
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AA seq
1010 aa
AA seq
DB search
MAASTVFPVLRSSEYFTRPSIDELVERDVADPGYCSRVPNFIIGRAGYGQVRFLGNTDVR
GIDLNDIVRFEKHYVVVYEDETCKPPVGHGLNKAAEVSLLLNLKDLPEPSILIEVLRCHA
RKQGARFLSFNPVNGKWKFEVDHFSRFGLVDEEEEDVVMDEAAVRQPIAELREREPPSNG
YEIELSHSLPTHLGLDPAKMQEMRMAMFYNAEDDEYMEDGIGFPSDERYLSRERMNVDSP
TSSGGSRLRSVSPLHMSSQKVGRRPGMPARKEPQALLEYSKNSSELGTTTQGMLMSGQNK
GFPVKMTKVEGFKLPAEQETPVAGKMYTNCVVDAALFMGRSFRVGWGPNGMLIYSGSLVN
SPGTGLSSVIHIGKVASDKVVRDDKNKIKEDLAELVFSDPMDLHKSLDHEFLETESDSFR
LKLQKVVANRLVLPDICRSYIDIIERQLEVSDLSMSSRVLLMHQVTVWELIRVLFSERSN
GNQLEPIGNDDQEGMVLDKKENIDLDALPLVRRADFSNWLQDSVCHRVQGEVGSLSDARY
LEHILLLLTGQQLDSATEVASSRGDVRLAILLSQAGGSMSNRSDLSQQLDLWKRNGLDFD
YIEEDRLKVYELLAGNIEAALLDSAIDWKRYLGLIMWYQLPPDTSLDSIIHSYHHLLSEG
KVPYPVPVYIDEGPLDEALQWSPGDRFDISFYLMLLHANQDEKFGLLKTMFSAFSSSYDT
LDYHMIWHQRSILEAIGAFSSNDLHLLDLSFVYQLLCLGKCHWAIYVILHMPYLDDAPYI
HEKLIREVLSQYCESWSKDDAQRQYIVELGIPEEWMHEALALYHEYYGDQQGALENFIQS
GNWKKAHTIFMTCIAHTMFLSSHHQEIWEITSALENHKSEIADWDLGAGIYIDFYMIKNS
FQEESAMEDSDPLERKNESCKSFFGRLNDSLLVWGSKLPVESRACYSKMAEELCELFMNS
PGVAMNLHMGCFQTMLNAPAPDGCKSSYLQEAVSVFTEILCSDSAVWGLS
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggctgccagtactgtgttccctgtgctgcgctcctccgagtacttcacaaggccatcg
attgatgagctggttgagagggacgtggctgatcctggttactgcagcagggttccaaac
ttcatcatcgggagggctggatatgggcaagttaggtttctgggcaacactgatgtgagg
gggattgacctgaatgatatcgtcaggtttgagaagcattatgtggttgtttatgaggat
gagacttgtaagccgcctgtagggcatggtcttaataaagcagcagaagtgtcattgctg
ctgaatctaaaggatcttccggagcccagtatccttattgaggtgctgaggtgtcatgca
agaaagcaaggtgctaggtttctttcgttcaatccagtgaatggtaaatggaaatttgag
gttgatcattttagtagatttgggcttgtggatgaggaggaagaagatgttgtgatggat
gaggcagctgttaggcagccaattgctgaactaagagaaagagaaccaccttcaaatggt
tatgaaattgagctttcacattcattgcctactcatcttgggcttgaccctgcaaagatg
caagaaatgaggatggcgatgttttacaatgcggaagatgatgaatatatggaggatggg
attgggttcccatctgatgagaggtaccttagcagagaaaggatgaatgtggattcaccc
acttcaagtggaggttcaaggttaagatctgtctcacccttgcacatgtcttctcagaag
gttggcaggaggcctggtatgcctgctcggaaagaaccacaagcactattggaatacagt
aagaattcttcagagcttggtacaacgactcagggtatgcttatgtctgggcaaaacaaa
ggatttccagtgaaaatgaccaaggttgaaggctttaagctgccagctgagcaagaaact
cctgttgctggaaaaatgtatactaattgtgtagtggatgctgcattattcatgggtaga
tcatttcgtgttggttggggaccaaatggtatgcttatttattcaggtagtctggtcaat
agtcctggaactggcctatcttcagttatccacatagggaaagttgcaagcgacaaagtt
gtgcgtgatgataagaacaagattaaggaggacctagcagaactagtgttttctgatccg
atggacctccataagagtcttgatcatgaatttctggagactgagtctgactcgttcaga
ttaaagcttcagaaagttgtggcaaatcgtttggttttgccagacatctgcaggtcatat
attgacatcattgaaaggcaacttgaagtcagtgatttatctatgtcttcgcgtgtgctg
ttaatgcatcaagttacagtgtgggagttaattagggtcttgttctcagaaagatcaaat
ggaaaccagttggagcccattggaaatgatgatcaggaaggcatggttttagacaagaaa
gaaaacatagatcttgatgcactccctttggttaggagagcagactttagcaattggttg
caggacagtgtttgccatcgggtgcaaggcgaggtgggttccttaagtgatgccaggtat
ttggaacatattcttcttcttctaactggtcaacaattggactcagccacggaagttgct
tcctcaaggggtgatgtccggttggcaatcttgctaagtcaggcaggtgggtcaatgtca
aatcgatctgacctttctcagcaactggatctatggaaaaggaatggcctagattttgat
tatattgaggaagacaggttaaaggtatatgagttgctcgctggtaacatagaggctgct
ttactagattcagcaattgactggaaaaggtaccttggtttgatcatgtggtatcagtta
ccacctgatacatcacttgatagtataatccattcctatcatcatctccttagtgagggc
aaagttccctatcctgttcctgtatatatagatgaaggaccacttgatgaagcacttcag
tggtccccaggtgaccgttttgatatctctttttacctaatgcttcttcatgccaatcaa
gatgagaagtttgggctgctaaaaactatgttcagtgcattctcatcttcatatgatacc
ttggactatcatatgatatggcatcagcgttcaattttggaagctattggtgctttcagt
tcaaatgatcttcacttactagatttgagttttgtttatcaattactttgtcttgggaag
tgccattgggctatctatgtcattctacacatgccatatctcgatgatgccccatacatc
catgagaagttaatcagggaagttttatcacagtattgtgagtcctggagtaaagatgat
gctcaaaggcaatacattgtggaacttggtataccagaagaatggatgcatgaagctctg
gctctttaccatgaatactatggagatcagcagggtgcactggagaattttattcagagt
ggcaattggaagaaagctcatactattttcatgacctgtattgctcatactatgtttctg
tcatcacaccatcaggagatctgggagatcacaagtgccttggagaatcacaagtcagag
attgctgactgggaccttggagccggaatatacattgatttctacatgataaagaactca
tttcaagaagaaagtgcgatggaagattcggatccacttgagaggaaaaatgaatcatgc
aaaagtttcttcggccgattaaatgattccttgctagtctggggaagcaaattacctgtt
gaatcgagggcatgctactcgaagatggcagaggagctatgtgagcttttcatgaacagc
ccaggcgtggcaatgaatctacacatgggatgtttccagacgatgctgaatgccccggcc
cctgatggctgcaagtcgtcgtacctgcaggaggcagtgtctgtcttcaccgaaattctg
tgcagtgattcagctgtctggggcctttcttaa
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