Setaria viridis (green foxtail): 117856021
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Entry
117856021 CDS
T07951
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117856021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117856021
03012 Translation factors [BR:
svs03012
]
117856021
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117856021
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117856021
Translation factors [BR:
svs03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117856021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
R3H
HA2_C
HA2_N
nSTAND3
Ank_5
Ank_2
ATPase
AAA_19
AAA_22
Rad17
AAA_23
Ank
PhoH
ResIII
AAA_7
AAA_16
AAA_11
ABC_tran
Motif
Other DBs
NCBI-GeneID:
117856021
NCBI-ProteinID:
XP_034594313
LinkDB
All DBs
Position
5:37218436..37228337
Genome browser
AA seq
1197 aa
AA seq
DB search
MGRKGRKGKDAAAAGGGGVREATLVRVSKVLEDFRASDAEVYTFEPDISRLERGAIHQMC
RKMGMTSKSSGFGEQRRLSVYKSKRKQGPAMEEGPSHLRFSEEAIHVLQDLFTHYPPDDA
DLHGDANRNSSGKAANTKWKTDSAFCRPAMSKPDITKKVEMLASKINGSTQLRKIMEDRS
KLPISSFKDAITSTLENHQVVLISGETGCGKTTQVPQYILDHMWGKGESCKIICTQPRRI
SAISVAERISAERGEAVGDTVGYKIRLESKGGKNSSVMFCTNGVLLRVLIGRGTNTSKTR
NPKRSLDDAILGISHIIVDEIHERDRFSDFMLTILRDLLPVYPHLRLVLMSATIDAERFS
QYFNGCSVIQVPGFTYPVKTYYLEDVLSILQSVGDNHLNTTTSDKKQSSVLTDDFKSSMD
DSINLALLNDEFDPLLELISAEQNPEIYNYQHSETGVTPLMVFAAKGQLGDVCMLLSFGV
DCSAQDHDGKSALDWAQQEKQQEVYEVIKKHMECSTAKSTEDNELLNKYLATINPEHIDT
VLIERLLGKICVDSNEGAILVFLPGWEDINQTRERLLASPFLRDSSRFLVLSLHSMIPSL
EQKKVFKRPPAGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHASWV
SKANARQREGRAGRCQAGICYHLYSRFRASSLPDYQIPEIKRMPIEELCLQVKLLDPNCR
IADFLKKTLDPPVPETVRNAITVLQDLGALTQDEQLTELGEKLGSLPVHPSTTKMLLFAI
LMNCLDPALTLACAADYRDPFLLPMAPDERKRAAAAKVELASLYGGFSDQLAVVAAFDCW
RRAKDRGQESQFCTKYFVSSNIMYMLSNMRKQLQNELSQRGFVPADTSACSLNSKDPGIM
RAVLMAGAYPMVGRLLPPRKNARKAVVETASGAKVRLHPHSCNFNLSFSKSSGNPLLIYD
EITRGDGGMYIKNCSVVGSHPLLLLATEMVVAPPDDDSDEEEDSSEDEAEKSTLVQHKEE
IMSSPDNTVSVVVDRWLRFDATALDVAQIYCLRERLASAILFKVKYPQDVLPQALGASMY
AIACILSYDGLPAMVPSNDLPANRGSGQNSAEASSFSQGRRAGYIPPGGFLVSLLADKPH
QPPNFQNSYNHPGGASVHTGPSRAPTGRFDQSQRSFRNSGPGSSTRRSFKRQRDAAR
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggggcggaaggggcggaaggggaaggacgcggctgccgcgggcggcggcggcgtgagg
gaggcgacgctggtgcgcgtctccaaggtgctcgaggacttccgcgcctccgacgccgag
gtgtacacatttgaacctgatatatccagactagagcgaggtgcaatccatcagatgtgt
agaaaaatgggcatgacatccaaaagttctgggtttggtgaacagcgacgcctctctgtt
tataaaagtaaacggaagcaggggcctgctatggaagaaggacctagccaccttaggttt
tctgaagaggcgatacatgttttgcaggatttatttacgcattatcctcctgatgatgct
gatttacatggggatgccaaccggaattctagtggtaaggcagcaaacaccaaatggaaa
acagacagtgccttttgcaggccagcaatgagcaaacctgatataacgaagaaagttgag
atgcttgcctctaaaataaatggatccacacagttgaggaagatcatggaagacagatca
aagcttcctatttcatccttcaaggatgccatcacttcaactttggaaaatcaccaggtg
gttcttatttctggagaaacaggctgcggtaaaaccacccaggttccacaatacatcttg
gatcatatgtggggcaaaggagaatcatgtaagatcatatgcactcaaccacgtcggatt
tcagctatctcagttgccgagcgaatctctgctgaaagaggagaagctgttggtgataca
gttggatataagatacgtttggagtcaaaaggagggaagaattcatcagtcatgttctgc
acaaatggcgttcttttgagagtactgataggaagaggaactaacacctcaaagacacga
aatccgaagcggtcattagatgatgcaattttgggaatatcacacatcattgtggatgaa
atccatgaaagggataggttttctgatttcatgctgactattctaagagatttgttgcca
gtgtatcctcatcttcgtttggtactcatgagtgcaacaatcgatgctgagcggttttca
caatacttcaacggatgttcagtcattcaagtccctgggtttacctatcctgtcaaaact
tactatttggaggatgtgctttctattctgcaatctgtgggtgataatcatcttaatact
acaaccagtgacaaaaagcagagcagcgttttaactgacgatttcaaaagctcaatggat
gattcaattaacctggctttactcaatgatgaatttgatcctctccttgagcttatttct
gcagagcagaacccagaaatctacaactatcagcattcagagactggtgtaacaccttta
atggtttttgctgctaagggtcagcttggggatgtttgtatgcttttatcttttggtgtt
gattgttcagcacaggatcatgatggaaaatctgcattagattgggcacagcaagaaaaa
caacaagaggtttatgaagtaatcaagaaacatatggagtgcagtacagcaaaatcaact
gaagataatgagctgcttaataagtacttggcaactattaacccagagcacattgatact
gtgctaatagaacggttgcttggaaaaatttgtgtggattccaatgaaggagctatcttg
gtatttcttcctgggtgggaagatatcaatcaaactcgggaaaggttacttgcttctcca
ttcttacgggattcatcaagatttcttgtattgtcacttcattccatgattccgtcttta
gaacagaaaaaggtcttcaaacgtccacctgcaggggttcgtaaaattattctctcaacc
aacattgcagagactgctgtgacaattgatgatgttgtgtttgtcatagatagtgggaga
atgaaagagaaaagctatgatccatacaataatgtgtccacacttcatgcttcctgggtt
tcaaaagccaatgcaagacaacgtgaagggcgtgctggtcgttgtcaggcaggaatttgc
tatcatctttactcaaggtttagagcatcatcattaccagactaccaaattcctgaaata
aaaagaatgcccatcgaggaactttgtttgcaggtcaaactgcttgatccaaactgcaga
atagcagactttctgaagaaaacattggaccctccagttccagaaactgtaagaaatgcc
attactgtacttcaggatcttggtgctttaacacaagatgaacaactaaccgagttagga
gaaaagctgggttccctgccggtccatccatccacaaccaagatgctcctgtttgctata
ttaatgaactgcctggatccagcattgacattggcatgtgcagcggattatagagatcca
ttcctccttccaatggccccagatgagaggaaaagagcagctgcagcgaaagttgagctt
gcttcgttgtatggtgggttcagtgaccagcttgctgttgtggcggcattcgactgctgg
aggcgtgccaaagatagaggccaagaatctcaattttgtacaaagtactttgtctcttca
aacatcatgtatatgctatcaaacatgaggaaacagcttcagaatgaactgtctcaaaga
gggttcgttcctgcagatacatctgcctgcagcctaaactcaaaagatccaggtatcatg
cgtgctgttcttatggctggtgcctacccaatggtagggaggttgctccctcctcgcaaa
aatgctagaaaagcagttgtggaaacagcaagtggtgccaaagttcgtctacatccacat
tcgtgcaattttaacctatcatttagtaaatcttctgggaatccactgctgatatacgat
gagatcactcgaggtgatggtggaatgtatataaaaaattgctcagttgttgggtcacat
cctttgcttctgctcgctacagaaatggttgttgctccacctgatgatgatagtgatgaa
gaggaagattccagcgaggatgaagctgagaaaagcactttggtacagcacaaagaagag
attatgtcttctcctgataacactgtttcagtagttgttgatcggtggctccgatttgat
gctacggctctggatgttgctcaaatttactgcttaagagaacgtctagcatcagctatt
cttttcaaagtcaaatatcctcaagatgttctcccacaagcccttggagcgtcgatgtat
gccatcgcatgcatcctctcatacgatggcttgcctgctatggttccatccaatgatctt
ccagcaaaccgaggttcaggccagaattcagcggaagctagcagcttctcccagggaaga
agagctggttatattccacctggtggtttcctcgtgtccttgttggctgataagccacat
cagccaccaaattttcagaactcatataaccatccaggtggtgcttcagtacatactggg
ccatctagggctcccactggtaggtttgaccaatcccagcgttctttccgcaattctgga
cctgggagttcaacgcgacggtctttcaaaaggcagcgcgacgcagcacggtga
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