Setaria viridis (green foxtail): 117856079
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Entry
117856079 CDS
T07951
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117856079
09123 Folding, sorting and degradation
03018 RNA degradation
117856079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117856079
03041 Spliceosome [BR:
svs03041
]
117856079
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117856079
mRNA degradation factors
5'-3' decay
Lsm complex
117856079
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117856079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
117856079
NCBI-ProteinID:
XP_034594398
LinkDB
All DBs
Position
5:4394951..4398891
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AA seq
146 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRKPPGVGRGRGRGDVGAKPGGRGIGRGQDDG
GRGSGGRGRGGIGGKGGNKGGGRGRG
NT seq
441 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctcgcttctcaagactgcccaggggcatcccatgctcgtggagctgaag
aatggagagacgtacaacgggcatctggtcaactgcgacacgtggatgaacatccacctt
agggaggttatttgcacctcaaaggatggtgacaagttttggaggatgccggagtgttac
atccgcggtaacaccattaagtatcttcgagtgcctgatgaggtgattgacaaggttcag
gaggaaacttccaagagtcgatcagataggaagccacctggtgttggccgtggaagagga
aggggggatgtcggtgctaagcctggaggcagaggcattggacgtggccaagatgatgga
ggcagaggcagtggtggccgtggaaggggtggaattggtggcaaaggtggtaacaaagga
gggggccgtggccgtggctga
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