Setaria viridis (green foxtail): 117856088
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Entry
117856088 CDS
T07951
Name
(RefSeq) DNA damage-binding protein 2
KO
K10140
DNA damage-binding protein 2
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03420
Nucleotide excision repair
svs04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117856088
09124 Replication and repair
03420 Nucleotide excision repair
117856088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117856088
03400 DNA repair and recombination proteins [BR:
svs03400
]
117856088
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
117856088
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
117856088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
117856088
NCBI-ProteinID:
XP_034594408
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Position
5:complement(7669524..7673725)
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AA seq
584 aa
AA seq
DB search
MGPTTRTQFVYNRRRRRRSGGRRAVEEASDEEEQRQDTSSSSSDDEGDEEEEAEASGEEV
DDDDVEEVEEEAAAAEPAAKERPEKRGGRKGPITISLKKVCKVCKRTGHEAGFKGAVYID
CPMKPCFLCKMPGHTTLTCPHRVAMEHGVIPAPRRNTNTSLDYVFQSQVKGKISMVKPKF
LIPNQLECGNIKFHQRRVTCLEFHPTKNNVLLSGDKKGLLGIWDYVKLHEKITYDSVHSC
ILNSMKIDTSNDGILYTASSDGTISCTDLDTGIGSSLLNLNPNGWNGPSSWRMIYGMDLN
TDKGLLLVADNFGFLYFLDRRSKTRIGHPTLIHKKGSKVTSLHCNPARPEVLLSSGNDHY
ARIWDTRKLEANSPLASLAHGRVVNSGYFSPQSGNKILTTCQDNRIRVWDYIFGDLQSPS
REIVHSHDFNRHLTPFKAEWDPKDYTETVAVIGRYISENYNGVALHPIDFIDTSSGKLLA
EVMDPDITTISPVNKLHPQDDILATGSSRSIFIWKPKIEDEFTEERTKQKAKEYVYGSGS
RKKSNGKPDNSSDDDSDGDSGRKNKKAKKTRFTHTAKGKGKSKV
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgggccccacaacccgcacccagttcgtctacaaccgccgccgccgccgccgcagcggc
gggcggcgcgccgtcgaggaggcctccgacgaagaggagcagcggcaagacacctcctcc
tcatcctccgacgacgaaggagacgaggaagaagaagcggaagcgtccggagaagaagtc
gatgacgacgacgtggaggaggtcgaagaggaggcggcggctgccgagcccgcggctaag
gagcgtcccgagaagaggggcgggaggaagggcccgatcaccatcagcctcaagaaagtg
tgcaaggtgtgcaaaaggacagggcacgaggcagggttcaagggggccgtgtacatcgac
tgccccatgaagccttgcttcctatgcaaaatgccaggtcatacaactttgacttgccca
catagagtagcaatggagcatggagttatcccagcccctagaaggaatacaaacacttca
ttagattatgtctttcagagccaagtcaagggcaagatttccatggttaagcccaagttt
ctgatacccaatcaactagagtgtggaaacataaaatttcatcagagacgtgtgacttgc
ttggaatttcatccaactaagaacaatgttcttttatcaggagataagaaagggcttctg
ggtatttgggattatgttaagttgcacgagaagattacatatgattctgtgcactcctgc
attctgaacagtatgaagattgatacctccaacgatggaatactatatacagcttcctct
gatggtactatcagttgcacagacttggatactggcattggctcctccttgttaaatctc
aacccgaatggttggaatggtccaagctcttggcgcatgatatatgggatggacttaaac
actgacaaaggtcttcttttggtggcagataactttggttttctttacttcctggataga
cgatcaaagactagaattgggcatccaactcttatacataaaaagggtagcaaggtaacc
agccttcattgcaaccctgcacgacctgaagttcttctgagcagtgggaatgatcactat
gcccgtatttgggatacaaggaagcttgaagcgaactcgccccttgccagccttgctcat
ggacgggtggttaattcaggttatttttctccacaaagtgggaataagatcttgacaaca
tgtcaggacaaccgtattcgtgtatgggactatattttcggtgatcttcaatccccaagt
agagaaattgtgcacagtcatgatttcaatcgtcacctgacacccttcaaagctgagtgg
gatccaaaggattacacagaaacagttgcagtcattggccgttacataagtgagaactac
aacggtgttgctctgcatcccatcgatttcatagataccagttctgggaagcttctggct
gaggtgatggaccctgacataacaacaatcagcccagtgaacaagctacacccgcaagat
gacatcctggcaacaggaagctcaaggtccattttcatttggaaaccaaagattgaagat
gaatttacagaagaaaggaccaaacagaaggccaaggaatatgtatatggatcaggttcc
cggaagaaatcaaatggcaagcctgacaatagtagtgatgacgactcagatggcgattct
ggcagaaagaacaagaaagcaaagaagactcgtttcactcacaccgcaaaaggaaaaggc
aaatccaaagtctga
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