Setaria viridis (green foxtail): 117856333
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Entry
117856333 CDS
T07951
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117856333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117856333
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117856333
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117856333
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
117856333
NCBI-ProteinID:
XP_034594611
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All DBs
Position
5:24357620..24377287
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AA seq
233 aa
AA seq
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MAPPVPGLQIRPVTAANYEAQLDAIGSLLTRYPFVSIDTEYPGTVHRPPPGRSENQLAPY
ERYALVKANVDELPIVQLGITLCDEYGNLPLVAGSDGRPLELAREVTFSDFDARRDRHAP
ESVAFLPSQGVDFDQARKRGVSSAAFAAKLAAVLSAQQQRQRDGELTWAAFGGAHDFAYM
ARDLLGGRLFDAKYMAEHCERADLCGGGGLRRVADSLSARRNFLEPPACLAGR
NT seq
702 nt
NT seq
+upstream
nt +downstream
nt
atggcgccacccgtgcccggcctccagatcagacctgtcacggcggcgaactacgaggcg
cagctggacgccatcggctccttgctcaccaggtaccctttcgtctccatcgacacggag
tacccgggcaccgtccaccgcccgccgccagggagaagcgagaaccagctcgccccgtac
gagcgctacgcgctcgtcaaggccaacgtggacgagctgcccatcgtgcagctcgggatc
acgctctgtgatgagtacggcaatctccctctcgtcgccggcagcgacggccgtccgctc
gagctcgcgagggaggtgaccttctcggacttcgacgcacgccgcgaccgccacgcccct
gagtccgtcgcgttcctgccgtcacagggcgtcgacttcgaccaggcgcgcaagcgcggc
gtgagctccgcggcgttcgcggccaagctcgccgccgtcctgtcagcacagcagcagcgg
cagcgggacggcgagctgacgtgggcggcgttcggcggcgcgcacgacttcgcgtacatg
gcgagggacctcctcggcggccgacttttcgatgccaagtacatggcggagcactgcgag
cgggcggacctgtgcggcggcggcggtctgaggcgcgtggccgacagcctcagcgcgcgg
aggaatttcctggagccgccagcgtgccttgctggccggtag
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