Setaria viridis (green foxtail): 117856721
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Entry
117856721 CDS
T07951
Name
(RefSeq) RNA-binding KH domain-containing protein RCF3
KO
K21444
poly(rC)-binding protein 3/4
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117856721
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
117856721
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-GeneID:
117856721
NCBI-ProteinID:
XP_034594983
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Position
5:complement(314326..319005)
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AA seq
752 aa
AA seq
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MASRVTPSKRPFQKNSSDHNGRGKWQKTKHSSSHKSQFKIEPGVPIFRILCPASKSGNVI
GKEGSIIAKIRQETGVRIRVDKAVLDCDERVIFISAIEKDVEASREQFGKNDGGVAVSAR
GDHEKDKVNSKEKKDDPEKNLSKGEEDGSEGDYRNEEKDDSEKDSSKEQKGDLEKENSKE
DKDDSEKDHSNKEEKDDDSEKDHRKEEKDDDSEKDHSKEEKDDPFVAIDMKSEPERAVPS
ALKAILFVFDRIFAAEDDNETGDASGASTSVSLRLLVLYSQAGWLLGKGGSVIKQMSVDN
GCEIRVSKDNLPPCALSNDRLCQINGEVDSVRKGLNAVAELLLAHPPKESDVVAGIHSSG
SSSRSLFSQSDGFPSGMQSNFHFPLQGPSQANGPFDTIDRQPNIGPFPIIHEAPMHNHAS
VPIEPLTFRLLCSKDKVGSVIGKGGNTVKTIQNDTGCEIKVLDTVPKTDDRIISISGPAH
PGDGISPAQNAILHVQRKLMLPASDKEGPAMCRLIVSPNQVGCLLGKGGSIITEMRKLSG
AFIVVLSKDKIPMGVPEDDEVIQISGGCDAIQEALMQITARLRNHLFRDRMPALGPNMRP
PFGLLDSQFGPYVGNHESSSLFHKDFMGRPLDGISAPWTIKGIRDVGDPMSIPDIPGAEH
RELGGFSGPGQSSMMPNLTAEVFVPRLVIPALCGEDGGCLDRIREFSEAKIAVAEPIADA
MDTAVLISGTPDQMHAARSLVQAFVISESFAP
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacgcgtgacaccttctaagaggccgtttcagaaaaattcttcagaccacaat
ggccggggcaagtggcagaagacgaagcattcttcttcacataaatctcagttcaaaata
gagcctggtgttcccatttttcgcattctttgccctgcttcaaaatctgggaatgtaatt
ggtaaagaaggcagcattattgcaaagatacggcaagagactggagtgagaatcagggtt
gataaagcagtcttagattgtgacgagagagttattttcatatctgcaattgagaaggat
gtagaagctagtagagagcaatttggaaagaatgatggaggtgttgctgtttctgcccgt
ggtgaccatgagaaggataaagtcaacagtaaggagaaaaaggatgatccagagaaaaac
ctcagtaagggggaagaagatggttcagagggagactaccgtaatgaggaaaaggatgat
tcggagaaagacagcagcaaggagcagaagggtgatttagagaaagaaaatagtaaggaa
gataaggatgattcagagaaagaccacagtaataaggaagaaaaggatgatgattcagag
aaagaccacaggaaggaagaaaaggatgatgattcagagaaagaccacagtaaggaagaa
aaagatgatccctttgttgcaatagatatgaagtcagaaccggagagggcagtaccttca
gcactgaaggccattttatttgtcttcgataggatttttgcagctgaagatgataatgaa
actggggatgcatcgggtgcgagcacttctgtttctttgcgattattggttctatacagc
caagcaggttggcttttggggaagggtggtagtgtgattaagcaaatgtcagttgataac
ggctgtgaaatccgtgtttcaaaggacaaccttccaccatgtgcactatccaatgacaga
ctttgccagatcaatggagaggttgactcagtaaggaaaggtctgaatgcagtagctgaa
ttgctcttagctcatccacccaaggaatctgatgtagttgctggtattcattcttctgga
tcatcatcgcggtcattgtttagccagtcagatggttttccttcaggaatgcaatctaac
ttccatttccccttgcaagggccatcccaagccaatggaccttttgataccattgatcgt
caaccaaatattggtccttttcctatcatacatgaagctccgatgcacaaccatgcctca
gttcctatagaacccctcacctttaggttactgtgttcaaaagacaaggttggcagtgta
atagggaagggtggaaacactgttaaaactatccaaaatgatacaggctgtgaaataaaa
gttcttgacactgttccaaaaacggatgatcgcatcataagtatatctggacctgcgcat
ccgggtgatggaatctcccctgcacagaatgccattttgcatgtgcagcgcaaacttatg
ttgcctgcctctgataaggagggtcctgcaatgtgtaggctgattgtttcacccaaccaa
gttggttgccttctgggcaaaggaggtagcatcataactgaaatgaggaagctttcagga
gcatttatagtagtgctgagcaaagacaagatcccgatgggtgtcccagaagatgatgaa
gttattcagataagcgggggctgtgacgctattcaagaagctctaatgcagataactgct
aggcttcgtaaccatcttttccgagacagaatgcctgcattgggtcctaatatgcggcca
ccttttggtttgttagattctcagtttggtccatatgtgggaaaccatgaatcttcatct
ctgtttcataaagattttatgggacggccattggatgggatctctgccccttggacaata
aagggcattcgtgatgttggtgatccaatgtcaatacctgatatccccggagcggagcat
agagaactcggtggattttctggtcctggtcagtcatccatgatgccaaacttgactgca
gaggtctttgttccaagattagttattcctgctctctgtggtgaagatggaggttgtttg
gataggattcgtgagttttcggaagctaagatagcagtcgctgaacctatagctgatgca
atggacactgctgttttaatatctggcacaccagaccagatgcatgcagcccgaagtctt
gtccaagcatttgttataagtgaatcgtttgccccatga
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