Setaria viridis (green foxtail): 117856814
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Entry
117856814 CDS
T07951
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117856814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117856814
03009 Ribosome biogenesis [BR:
svs03009
]
117856814
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117856814
Spliceosome [BR:
svs03041
]
Complex A
U1 snRNP components
U1 related factors
117856814
Complex B
117856814
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
Pre-60S particles
Helicases
117856814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
117856814
NCBI-ProteinID:
XP_034595122
LinkDB
All DBs
Position
5:complement(11503213..11509791)
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AA seq
492 aa
AA seq
DB search
MSRFDGRAADPGSYRDRRSEGAFGGGSRAFAAPSKADASAAELDGLPRFEKNFYVESPAV
AGMTEDEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQGW
PMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQ
EATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYL
VLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKVTIGSE
ELKANHAIVQHVEILSESQKYNKLVNLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP
ALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVH
RIGRTGRAGAKGTAYTFFTAANARFAKELINILEEAGQKVSSELAAMGRGAPPPSSGYRD
RYRGYGGGRSWS
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcttcgacggccgcgccgcggacccgggctcctaccgcgaccgccgcagcgag
ggggcgttcgggggcggatcaagggcgtttgcggcgccgagtaaagcggatgcttctgcg
gcggagctggatgggctgccacggttcgagaagaacttctacgtggagtcgcccgccgtg
gccggcatgacagaggacgaggtggaggcgtaccgccgccgccgggagatcaccgtcgag
ggccgcgatgtgcccaagcccgtgcgcgagttccgtgatgttggcttcccagaatatgtg
ttgcaagaaatcacgaaagctggctttgtggaacctactcctatccaatctcaaggttgg
ccaatggcacttaggggtcgtgaccttattggcattgcagagacaggatcagggaaaact
cttgcttaccttttacctgccattgttcatgtgaatgctcagcctattcttgctcctggt
gatggtccaatcgtcttggtgttagctcctacacgtgaacttgctgttcagatacagcaa
gaggcaaccaaatttggtgcatcatcaaagataaaaagtacttgcatctatggtggtgtg
ccaaaaggtccacaagttcgtgatcttcaaaaaggtgtcgaaattgttatagccacacca
ggacgactaattgatatgatagaatcacatcatacaaacttgcgaagggtcacatatctt
gttttagatgaagctgatcggatgctagacatgggctttgaacctcaaattaagaaaatt
gtttctcagattcgtccagatcgccaaacactttactggagtgctacctggccaaaggaa
gttgagcagctagcaaggaatttcctttttgacccatacaaggtcactattggttctgaa
gaattgaaggctaatcacgccatcgtgcagcatgtggagatattatctgagagtcagaag
tataacaagctggttaatctattggaggatataatggacggcagccgaattttaatattt
atggacacaaagaagggatgcgatcagattactagacagcttcgaatggatggttggcct
gctttgtctatccatggtgacaagagccaagcagaacgcgattgggtcctttctgaattt
aagtcaggcaaaagtcctattatgacagccactgatgtcgctgctcgaggcttagatgtc
aaggatgtaaagtatgtcattaactatgactttccggggtcacttgaagattatgttcat
cgtattggtcggactggcagagccggtgcaaaaggaacagcttacacctttttcactgca
gctaatgccagatttgccaaggaacttattaatattctggaagaagctggacaaaaagtt
agctctgaattagctgctatgggacgtggtgcaccacccccttcttcaggttaccgtgat
agatatagggggtatggtggtggccgatcatggagttga
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