Setaria viridis (green foxtail): 117856875
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Entry
117856875 CDS
T07951
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117856875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117856875
03036 Chromosome and associated proteins [BR:
svs03036
]
117856875
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117856875
Coactivators
SAGA/TFTC/STAGA complex
117856875
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
117856875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
117856875
NCBI-ProteinID:
XP_034595198
LinkDB
All DBs
Position
5:complement(39109569..39116414)
Genome browser
AA seq
776 aa
AA seq
DB search
MSEATDGQLQATEQEVSVHASQQAGQQNVNSTDQFSKPEPVTEGSKNEQPVEVEQQNPQL
HQSQPESRLQQAETNSFQLAEKEAGYFGQQSVAGSKVDVAQPSVVQQNAKQIVSQQAPSG
AQDTRKGPSIPFNMLIPILQAHLDRDKDMQLQTVWAKLRRNEVHKDDFLRVIRNIVGDQM
LKQAAHKVFLQMQAQAQRNNQANPSQHSLFSQASTQQMPSSGSAQLHDQKVRPPGPSNQG
QKNQVSSSPQAFAPPSGTHPQTSVQYLPHDNPNQNPDTKGTNAIPNQPPRMNSAISLQTK
NKQHQPTQFQQASQQIYGASNPGAQGYPQSITGSLRPPNPVPETQPSMHAHGMPPAKVAP
PPTHPMMQHNAVAWQMHQNKELKTNTPPPNANAKQNSESAGKARTVGAGNSSAKGKQAPP
NSSTPNASGGAKSNKKSGGQKKSSEAAGSTQPSSSKKQKTSGAFQEQSIDQLNDVTAVSG
VNIREEEEQLLSAPKEESLASQEARRIAQEEEEKLFLRKGPLLKKLTEIARKCNLKNVNL
DVEHCLSMCVEERLRRFISTLIRVSKQRIDTEKTGHRLVITSDVGRQILQMNQKAKEEWD
KKQAEEADKNKKQNEADGNGTAELEKEKEESRPKNAKPNKEEDDKMRTNAANVAARQAVG
GSDMLSKWQLMAEQARQKREGLDVAAASQPGRGPGPRPLSKFGKGLGENQEGAKRSHSSA
FGTGMKRPGRTPFAGPQRTITVKDVICALEREPQMTKSRLIYLLHERLPGGDSTAD
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagctacagatggtcagctgcaagcaacagagcaggaagtaagcgtccatgca
agtcagcaagcagggcaacagaatgtgaattcaacagatcaattctccaaaccagaaccg
gtaactgaaggttcaaaaaatgaacaacctgtcgaagtagagcaacagaatccacagcta
caccaatcacagccagaaagccgactgcaacaggctgaaacaaatagcttccagttagct
gagaaagaagcagggtattttggtcagcagagtgttgcaggttccaaagttgatgtagct
cagccctcagtggttcagcagaatgcaaagcaaattgtcagtcagcaagcaccatctggt
gcccaggatacaaggaaagggccatctataccatttaatatgttaattccgatactgcaa
gcacatcttgacagagacaaagatatgcagcttcaaactgtatgggcaaaacttaggcgt
aatgaagtccacaaagatgatttcttaagagtcatcaggaatattgttggggatcaaatg
ctcaagcaggcagcccataaagtttttctacagatgcaagcccaggcacaaagaaataac
caggcaaatccaagtcagcattctttattctctcaagcgtcgacacagcagatgccttcc
agtggttcagcacagttacatgatcagaaagtccgtccacctggaccatccaaccagggt
cagaaaaaccaggtgtcgtcttcacctcaggctttcgcaccaccatcaggaactcatccg
caaactagcgtacagtatcttcctcatgataaccccaaccaaaatcctgacacaaaggga
acaaatgctataccaaatcaaccacctagaatgaactcagcaatttcattgcaaacaaag
aacaaacagcatcaacccacacaattccagcaggcctcacagcaaatatatggagcaagt
aatcccggtgcccagggttaccctcagtcaatcactggttctcttagaccaccaaatcca
gttccggaaacacagccatccatgcatgctcatggaatgcctcctgcaaaagttgcccct
cctcctactcatccaatgatgcagcacaatgcagttgcatggcaaatgcatcaaaacaag
gaattgaaaaccaatactccccctccaaacgctaatgcgaagcaaaattctgagtctgct
ggcaaagcccgcacggttggcgcaggaaattcttcagctaaaggaaagcaggcaccccct
aactcatctacaccgaatgctagtggaggtgcaaagagtaacaagaaatcgggtgggcag
aagaaatcatcggaagcagcaggctctacgcagccttcaagcagtaaaaagcagaagaca
tccggagccttccaggaacaaagcattgatcaacttaatgatgtcactgctgttagtggt
gttaatattagggaggaggaagaacagctactctctgccccaaaggaagagagccttgcc
tcacaagaagcacgaagaattgcacaggaagaagaagaaaaacttttcctacggaagggc
ccactcctgaagaaacttacagaaatcgctcggaaatgcaatctgaagaatgttaatctt
gacgttgaacattgtttatcaatgtgtgtggaggagcgactgcgaagattcataagtact
ctcatacgagtctcaaaacagagaatcgacactgaaaagactgggcatcgactagttatt
acttcagatgttggccgtcaaattttgcaaatgaaccagaaagctaaggaagagtgggat
aaaaaacaagcagaagaagctgacaagaacaagaagcagaatgaggctgatggcaatggc
actgcagaattggaaaaagaaaaagaggaaagtcgcccaaagaatgcgaagcccaacaag
gaagaagacgataagatgagaacgaatgcggcgaacgttgctgctcggcaagcagttgga
ggaagtgatatgctctcaaagtggcagctgatggctgaacaagccaggcagaagcgagaa
ggccttgatgtggctgctgcttcgcagccaggtagaggaccaggtcccaggccattatcc
aaattcggaaaaggtcttggcgaaaaccaggaaggtgcaaagaggagccattcttcagcg
ttcggaactggcatgaaaagacctggcaggacaccatttgcaggacctcaacgaacgata
actgtgaaagatgtgatctgtgccctggagagggaacctcagatgacgaaatcacggctc
atctacctactgcacgagcgattgcccggaggagattctactgcagattag
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