Setaria viridis (green foxtail): 117856954
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Entry
117856954 CDS
T07951
Name
(RefSeq) DNA mismatch repair protein MLH1
KO
K08734
DNA mismatch repair protein MLH1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03430
Mismatch repair
svs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117856954
03460 Fanconi anemia pathway
117856954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117856954
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
117856954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mlh1_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
117856954
NCBI-ProteinID:
XP_034595300
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All DBs
Position
5:45985831..45992116
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AA seq
724 aa
AA seq
DB search
MDVDDPSPRAGGCGANPPRIRRLEESVVNRIAAGEVIQRPSSAVKELVENSLDAGASTVS
VTVKDGGLKLIQVSDDGHGIRPEDLPILCERHTTSKLSAYEDLQTIKSMGFRGEALASMT
YVGHVTVTTITEGQLHGYRVSYKDGVMENEPKPCAAVKGTQIMVENLFYNMVARRKTLQN
SNDDYPKIVDFISRFAVHHINVNFSCRKHGANRADVHSASTSSRLDAIRNVYGASVVRDL
MEIEVSDENAGDAVFKMDGYISNANYVAKKITMILFINDRLVDCTSLKRAIEFVYSATLP
QASKPFIYMSINLPPEHVDVNIHPTKKEVSLLNQERIIEIIKNTIEEKLRSSNTTRIFQT
QAINPSALTQANTQKEKGTEVKMASGMKSQKTPVSQMVRTDPRDPSGRLHTYWHGQSSNL
EKKSDLVSVRNVVRSRRNPKDACDLSSRHELLTEVDSQCHPGLLEVVKNCTYVGLTDEVF
ALIQHNTRLYLVNVVNVSKELMYQQALCRFGNFNAIQLSEPAPLRELLLMALKDDELMGD
ENDEEKMEIAEVNSEILKENAEMINEYFSIHVDKDGNLTRLPVVLDQYTPDMDRLPEFVL
TMANDVTWDDEKECFRTAAAAIGNFYALHPPILPNPYGSGIQLYKKNKDCMASGKCVDNT
DEDDIDQELLAEAETAWSQREWTIQHVLFPSMRLFLKPPKSMATDGTFVQVASLEKLYKI
FERC
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgatgacccgtcgccgcgcgccggcgggtgcggcgcgaacccgccgcgcatc
cggcggctggaggaatcggtggtgaaccgcatcgcggcgggggaggtgatccagcggccg
tcgtcggcggtgaaggagctcgttgagaacagcctcgacgccggcgcctccaccgtctcc
gtcaccgtgaaggacggaggactcaagctcatacaggtctccgacgacggccacggcatt
cggcctgaggatttgccaatattgtgtgaaaggcatactacctcaaagctatccgcatat
gaggatttacagacaataaaatctatggggttcaggggggaggccttagccagtatgact
tatgtcggccatgttactgtgacaacaataacagagggccagcttcatggctaccgtgtt
tcttataaagatggagtaatggagaatgagccaaaaccatgtgctgcggttaaaggaact
caaatcatggttgaaaatttattttacaatatggtagctcgtagaaaaacattgcagaac
tccaatgatgactaccccaagattgtggacttcattagtcggtttgcagtccatcacatc
aacgtgaacttctcttgtaggaagcatggagccaatagagcagatgttcatagtgcaagc
acatcttctaggctggatgctataaggaatgtctatggggcttctgtcgtccgtgatctg
atggaaatagaggtttcagatgagaatgctggagatgcagtcttcaagatggatggctac
atatcaaatgcaaattatgtggcaaagaagatcacgatgatccttttcataaatgatagg
cttgtagactgcacttctctaaaaagggctattgaatttgtgtactctgcaacattgcct
caagcatccaaacccttcatatacatgtccatcaatcttccaccagaacatgtcgatgtc
aatatacacccaactaagaaagaggttagcctcttgaatcaagagcgtattattgaaatt
attaaaaatactattgaggaaaagctgaggagttctaataccacaaggatattccaaact
caggcaataaacccctcggcacttactcaagctaacacgcagaaggaaaagggtactgag
gtcaaaatggcatctggaatgaaatctcaaaagactcctgttagccaaatggtcagaact
gatccacgtgatccatcaggaaggttgcacacttactggcacgggcaatcttcaaatctt
gaaaagaaatctgaccttgtttctgtaagaaatgtagtaagatcaaggagaaatccaaaa
gatgcttgtgatttatccagtcgtcatgagcttcttacagaagttgattctcaatgccat
cccggtctgttagaggttgttaagaattgcacatatgttggactgactgatgaagttttc
gctttgatacagcacaatactcgcttataccttgtcaatgttgtaaatgttagtaaagaa
ctcatgtaccagcaagcactttgccgttttggaaacttcaatgctatacagcttagcgaa
ccagctcctcttcgggagctgctactgatggcactgaaggatgatgaactaatgggtgat
gaaaatgatgaggagaaaatggaaattgcagaagtaaactccgagatactgaaagaaaac
gccgagatgattaatgagtacttctctattcacgttgacaaagatggaaacctgaccagg
cttccagttgtacttgatcagtacacccctgatatggaccgtctcccagaatttgtgctg
actatggcgaatgatgttacttgggatgatgaaaaagagtgcttccggacggcagctgct
gctattgggaatttttacgctctccatcctcccatccttccaaatccatatgggagtggc
attcagttgtacaagaaaaataaagattgcatggcaagtggtaaatgtgttgataataca
gatgaagatgatattgatcaagaactacttgcggaagcagaaacagcatggtctcaacga
gagtggaccattcagcatgtcttgtttccatccatgcgacttttcctaaagcccccaaag
tcaatggcaacagatggaacatttgttcaggttgcttctctggagaaactttacaagatt
tttgagagatgttag
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