Setaria viridis (green foxtail): 117857003
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Entry
117857003 CDS
T07951
Name
(RefSeq) probable chromatin-remodeling complex ATPase chain
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117857003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117857003
03036 Chromosome and associated proteins [BR:
svs03036
]
117857003
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
117857003
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
117857003
RSF complex
117857003
WICH complex
117857003
B-WICH complex
117857003
NORC complex
117857003
BRF complex
117857003
NuRF complex (fruit fly)
117857003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
HAND
Myb_DNA-binding
HDA2-3
DEAD
DBINO
CHDII_SANT-like
AAA_14
ToxN_toxin
Motif
Other DBs
NCBI-GeneID:
117857003
NCBI-ProteinID:
XP_034595361
LinkDB
All DBs
Position
5:complement(16042455..16050098)
Genome browser
AA seq
1107 aa
AA seq
DB search
MAKPVKYDDEEISSSAEEEEDQSDAAGSGSGDEGDEDEEDAAAPPAGDVEEEEAEGEGQQ
QEEEEVDEEEIEAVTTGGGAEEEEDAGADAPAEGDDESQSTEDDEAVAGDDTDETDAVVG
KREKARLKELQKRKKEKIQEILDTQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGSQS
KEKKPRGRGRHASKMTEEEEDEEYLKEEEDALAGAGGTRLLSQPSCIKGKMRDYQLAGLN
WLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMKEIQ
RFCPVLRAVKFLGNPEERNHIRDNLLQPGKFDVCVTSFEMAIKEKTSLKRFSWRYIIIDE
AHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWF
QISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQ
KDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLIENAGKMVLLDKL
LPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSE
KFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEY
TIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDED
IDRIIAKGEETTAELDAKMKKFTEDAIKFKMDDNAELYDFDDEKDENKVDFKKLVSDNWI
EPPRRERKRNYSESEYFKQALRQGAPAKPREPRIPRMPHLHDFQFFNNQRLNELYEKEVR
YLMQANQKKDTIDGEDEDQLEPLTAEEQEEKEQLLEEGFASWTRRDFNTFIRACEKYGRN
DIKSIASEMEGKTEEEVQRYAKVFKERYKELSDYDRIIKNIERGEARISRKDEIMRAIGK
KLDRYKNPWLELKIQYGQNKGKFYNEECDRFMLCMVHKLGYGNWDELKAAFRMSPLFRFD
WFVKSRTTQELARRCDTLIRLVEKENQEYDEQERQARKEKRLAKNMTPTKRAALRNSEGE
TTPSNSFKRRRQSLMDDYVGSGRRKRG
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccggtgaagtacgacgacgaggagatctcgtcctccgccgaggaggaggag
gaccagtccgacgccgccggctccggatctggcgatgagggggacgaggacgaggaggat
gccgcggcgccgcccgcgggggatgtggaggaggaagaggctgagggggaggggcagcag
caggaggaggaggaggtcgacgaggaggagattgaggccgtcactaccggcggcggcgcc
gaggaggaggaggacgccggtgccgacgccccggcggagggcgacgacgagtcccagtcc
accgaggacgacgaggccgtggcgggcgacgacaccgatgagactgatgcagttgttggg
aagcgtgagaaagctaggctaaaggaactccagaagaggaagaaggaaaaaatccaagaa
atattggatacacaaaatgctgccattgatgcggatatgaacaataaagggaaggggcga
ctgaaataccttcttcagcagactgaaatatttgctcactttgcaaaaggcagtcaatca
aaagagaaaaagccgcgtgggaggggacggcatgcgtcaaagatgacagaagaagaggaa
gatgaagaataccttaaggaggaggaagatgccctagctggtgcaggaggaacacgcttg
ctttctcagccttcatgcattaagggaaaaatgcgagattatcagttggctggacttaat
tggctcatacgtttgtatgagaatggtatcaatggaattttagctgatgagatgggtctt
gggaaaactcttcaaaccatttcactgcttggctatctgcatgaattcagaggtataact
ggtcctcacatggttgttgcgccaaagtccacgcttggcaactggatgaaggaaatccaa
cgtttttgccctgtccttcgtgctgtgaagttcttgggaaatccagaagagaggaaccat
ataagggacaatttgctacagccggggaaatttgatgtgtgcgtgactagttttgaaatg
gcaatcaaagaaaaaacttcattgaagcgttttagctggcgctacattattattgatgaa
gctcaccggataaaaaatgagaattctcttctgtcgaagacaatgaggatttacaatact
aattatcgtctcctcatcacaggcactccactgcagaataatcttcatgagctttgggct
ctactcaacttcttgctacctgaaatatttagctctgctgagacctttgatgaatggttt
caaatatctggagaaaacgatcaacaggaggtggttcagcagcttcataaggtccttcgc
ccatttcttcttcggaggcttaagtctgatgtagaaaagggtttacctccaaagaaggaa
accatacttaaagttggaatgtctcagatgcaaaagcagtactatcgtgcgctgcttcag
aaagatttagaggttatcaatgctggtggtgaacgcaagcgattgctcaacattgccatg
cagttgcgcaagtgttgcaaccatccatatctatttcaaggagctgaacctggaccaccc
tacacaactggtgaacatttaattgagaatgcaggaaaaatggttctgctagataaattg
ctgcccaagctaaaggaacgtgactccagagtccttattttttcacagatgaccaggctc
ttggatatcttggaagattatcttatgtacagaggatatcaatattgccgcattgatgga
aatacaggaggagaagatcgtgatgcatccattgaagcctttaacaagccaggaagtgaa
aagtttgttttcttgctttcaactagggcaggaggcctcggtattaacttggccactgct
gacgttgtggttctatatgacagcgattggaatccacaagctgatctgcaagctcaagac
cgtgcacacaggataggtcaaaagaaagaagttcaagtttttcgcttttgcacagagtat
actattgaggaaaaagtgattgagagagcgtacaagaagctcgcgttggatgctttggtt
attcagcaaggacgattggcagagcagaaaactgtcaataaggatgaccttctgcaaatg
gtgagatttggtgctgaaatggttttcagttctaaggacagcacgataacagatgaggat
attgaccgtattatagctaaaggagaggagacaacagcagaacttgatgcaaaaatgaaa
aagttcactgaggatgccattaaatttaagatggatgataatgctgaattgtatgatttt
gatgatgagaaggatgaaaacaaggttgatttcaagaaacttgtcagtgataactggatc
gagccacctagaagagaaaggaagaggaactattctgagtctgagtactttaagcaagct
cttcgccaaggtgcaccagcaaagcctagggaaccaaggattccaagaatgccacacttg
catgatttccaattcttcaacaaccaaaggctaaatgaattgtatgaaaaggaagtgaga
tacctcatgcaagcaaaccagaagaaagataccatagatggtgaagatgaagatcagttg
gagcctttgactgctgaggagcaggaagagaaggagcagttattagaagagggttttgca
tcatggacgaggagagacttcaacacatttattcgtgcatgtgagaagtatggtcgaaat
gacataaaaagtatagcctctgaaatggaggggaagacagaagaggaggttcagcgttat
gctaaagttttcaaggagcgatacaaggaactgagtgattatgatagaattatcaagaat
attgaaagaggagaagcaaggatatcccgcaaggatgagattatgagagcaattgggaag
aagctagaccgctacaagaacccatggttagagttgaaaattcaatatggccaaaataaa
gggaagttctataacgaggaatgtgaccgttttatgctttgcatggtgcataaacttggc
tacgggaactgggatgaactgaaagctgccttccgcatgtcgcccttgttccggttcgat
tggtttgtgaagtccagaactacacaagagttggctaggcgatgtgacaccctcatccga
ctggttgagaaggagaatcaagaatatgatgagcaagaaaggcaggcaagaaaggagaaa
aggcttgctaagaacatgactcctacaaagcgagcagcattgagaaattcagagggtgag
acaacaccatcgaattcattcaagaggcgtaggcagtcacttatggatgattatgtgggc
tcggggaggcgtaagagagggtga
DBGET
integrated database retrieval system
