Setaria viridis (green foxtail): 117857203
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Entry
117857203 CDS
T07951
Name
(RefSeq) AMSH-like ubiquitin thioesterase 3
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117857203
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
svs01002
]
117857203
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
svs04131
]
117857203
04121 Ubiquitin system [BR:
svs04121
]
117857203
Enzymes [BR:
svs01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
117857203
Peptidases and inhibitors [BR:
svs01002
]
Metallo peptidases
Family M67
117857203
Membrane trafficking [BR:
svs04131
]
Endosome - Lysosome transport
Others
Others
117857203
Ubiquitin system [BR:
svs04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
117857203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
Motif
Other DBs
NCBI-GeneID:
117857203
NCBI-ProteinID:
XP_034595615
LinkDB
All DBs
Position
5:14375992..14382169
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AA seq
510 aa
AA seq
DB search
MAPPQPARGGAINIEACARPIAVDNRISLPYYFRIAGSLLRQANIYRNEKNILDLYVILL
RYSSLLCETIPKHRDFLAFKLREKAFYDKLNDVIIELESLKPVVQRQVAEHNRGGTVESN
TNSLNGTYATSRRIEQHTPSLYTPQPFVGSANGALQKSFHVGRQVPSLPSVQPDKQIQKQ
FMNLPYPSEETLARHSILGPNGLHGRWNGPVTGIKVQYPSNFELTQSDMTSLVPSISNQD
GSNGPGTAPPDSSTNDNEDMKSVLSLDDGRWSVPAEKRTPLPSASLEEELFQLNIKQPSP
PPVLAEVQRPISPSSVADPTPGLPTSGTARFQNLHVPIKLMECFLRVAESNTKRSLETCG
VLAGTLKKRTFYVTTLIIPKQKSTSNTCEATNEEELFEVQDTGSLFTLGWIHTHPTQSCF
LSSIDLHNHYSYQVMLPEAIAIVMAPTDTTRKHGIFHLTDPGGMGVIHDCQERGFHPHKA
PLDGSPIYEQCSHVYMDTDIKFDMIDLRER
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggcccccccgcagccagccaggggcggcgccatcaatatcgaggcgtgcgctcggccg
atcgccgtcgacaaccgcatcagcctcccctactacttccggatcgcgggcagtcttctc
cggcaggctaatatatatcggaacgagaagaacatcctcgacctgtatgtcatcctgctg
agatactcgagcttattgtgtgagacgataccgaagcatcgcgatttccttgccttcaag
ttgagagaaaaggcgttctatgataaacttaatgatgttatcatagagcttgagtcattg
aagccagttgtgcagcggcaggttgccgagcataacagaggaggtactgtggaatcaaat
actaatagtctaaatggtacctatgctacatctcgtaggatagagcagcataccccaagc
ttgtatactccacagccatttgtaggtagcgctaatggagcactgcaaaaatccttccat
gtcgggagacaagtgccatcattaccaagtgtccaacctgataagcagattcagaaacaa
tttatgaatctgccttatccaagtgaagaaacactagctaggcactccatattaggacct
aatggtcttcatggccgatggaatgggcctgttactggaattaaggttcaatatccaagc
aattttgaattaacacaaagtgacatgacaagtttagtaccatccatctcgaaccaagat
ggttcaaatggtcccggtactgcacctccagatagctccacaaatgacaatgaggatatg
aaatctgttctctctcttgatgatggtcggtggtctgtaccagcagaaaaacgaacccca
cttccttctgctagtttggaagaagagttgttccaattgaatatcaaacagccttctcct
cctccagtcctggcagaggtacagagaccaatttctccatcaagcgttgctgatccaaca
ccaggacttccgacctccggaactgcccgttttcagaacttgcatgttccgatcaagttg
atggagtgctttctaagggttgctgaatcaaacaccaaaagaagcttagaaacttgtggg
gttcttgctggtaccctgaaaaaaagaactttttatgtgacaaccttaattattccaaag
cagaaatcaacatctaatacgtgtgaagctacgaatgaagaagaactatttgaagttcag
gacacgggctcacttttcactcttggttggattcatacacatccaacacagtcctgcttc
ctgtcttccattgatctccacaatcattattcttatcaggtcatgctacctgaagcaatt
gcaatagttatggcacctactgacacaacaagaaaacatggtatatttcacctcacggat
ccaggtggtatgggtgtgatccatgattgtcaagagagaggtttccatccacataaggca
cctctagatggctcgccaatctatgagcagtgctcccacgtctacatggacactgatata
aagtttgatatgattgatctccgagaacgatga
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