Setaria viridis (green foxtail): 117857237
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Entry
117857237 CDS
T07951
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117857237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117857237
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
117857237
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
117857237
NCBI-ProteinID:
XP_034595651
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Position
5:complement(46227225..46233691)
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AA seq
485 aa
AA seq
DB search
MASLADSFLADLDELSDNEGYPEADNAEAAGMEEDGDDDMPDLESLNYDDLDSVSKLQKT
QRYNDIMQKVEVALQKGTDFSNQGSILEEDPEYQLIVDCNALSVDIENEIIIIHNFIRDK
YRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPL
SEENLEKTVEACDRALTLDTAKKKVLDFVESRMGYIAPNLSAIVGSAVASKLMGTAGGLG
ALAKMPACNVQLLGAKRKNLAGFSTATSQFRVGYLEQTEVFQSTPPALRTRACRLIAGKS
TLAARIDSIRGDPTGKAGRNLLEEIRKKIEKWQEPPPAKLPKPLPVPDSEPKKKRGGRRL
RKMKERYAQTDMMKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQNKLAAK
VAKKFKEKSYGSSGATSGLTSSLAFTPVQGIELSNPQAQGNPLGGGTQSTYFSETGTFSK
IRRTQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcaagccttgccgattcttttctagcggatcttgatgaactgtcagacaatgaaggc
tatcctgaagcagacaatgctgaggcagctggtatggaggaggatggtgatgatgatatg
cctgaccttgagtctcttaattatgatgatctagatagtgtctcaaagttgcagaagaca
caacgctataatgacataatgcaaaaagttgaagttgcacttcagaaaggcactgacttc
tccaatcaaggttccatcctggaggaggatccagagtaccagctaattgttgattgcaat
gctttgtccgtagatattgagaatgaaatcatcataatccataatttcatacgtgacaag
tataggttgaagtttcctgaactggagtccctcgttcatcatccgattgattatgcccgt
gttgtcaaaaagattggaaatgagatggacttaacacttgtagatctggaagggctttta
ccttctgcaattataatggttgtctcagtgacagcatcaacaacaagtgggaagcctctt
tccgaggagaatttggaaaaaactgttgaagcatgtgacagagcccttaccctcgatact
gcaaagaagaaagtgcttgattttgtagagagcagaatgggttacattgcaccaaacctt
tctgctattgttggtagtgctgttgcctcgaaactgatgggtactgctggtggtctggga
gcgcttgcaaaaatgcctgcctgtaatgttcagttacttggtgcaaagaggaaaaatctt
gctggattttctactgccacatctcagtttcgtgttggctatcttgaacaaactgaagta
tttcagagcacacctccagctctgaggactagggcgtgcaggcttattgctggaaagtca
actctagcggcaaggattgattcaattagaggtgatccaactggaaaagctgggcggaac
ttgttagaagaaattcgtaagaagatcgagaagtggcaagaaccgcctcctgcaaagctt
ccaaagccccttcctgttcctgactctgagcctaaaaagaagagaggaggtcgtcggctt
cgaaaaatgaaagaaagatatgcgcaaactgatatgatgaagcttgccaaccggatgcaa
tttgggattccagaggagagctcattaggtgatggcttgggggaaggttatggcatgctc
ggacaggcaggaagtggcaagctgcgtgtttcagctgcacaaaacaagcttgctgctaaa
gtggcgaaaaaattcaaggagaagagctatggtagcagcggtgcaacttcaggattgaca
tctagtttggcatttacaccagttcagggaatagagttgtcaaatccacaggcccaaggg
aacccgcttggaggtggaactcaaagtacctacttttctgagactggcacattttcgaag
atcagaaggacccagtag
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