Setaria viridis (green foxtail): 117857293
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Entry
117857293 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117857293
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117857293
Surveillance factors
Other surveillance factors
117857293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
117857293
NCBI-ProteinID:
XP_034595774
LinkDB
All DBs
Position
5:complement(44435353..44442429)
Genome browser
AA seq
1539 aa
AA seq
DB search
MAERKLDRPAALGKDGLSLGIEEDRAAAAAMGFVDDSKDQLHLDNSIPLSPQWLYAKPAD
GKISLPHGSSFEPAEREVRMLEGTVDRKERRRNIFDADSSLRWLEEERETSLLGRRERKK
EVERDVDNRKIDRRSDNVSARDNTDSRAPPASDRWNDGSTRTLGNEGRRDGKWSTRWGPD
DKEKDSRSEKKADAEKDETHAEKQTFTGRLLSESDSRDKWRPRHRQESHSAGTATYRAAP
GFGSEKGRVKDSNVGFAPGRGRGNPNSVTSFSRPSSAGPIGAPAVHGKSAKAAGSFRYPR
GKLLDIYRQKNMMSSFDDAKLEEIPSITLSTSSKPLAFVAPDTVEEALLEDIRKGKVISS
EGSNATGNKKERAKELEELASGIDDDKEKAAVAFGGLGQEGSSGLISEKDAFYDNRTLSS
GVGTSPPKRPMEENAGSNEYGITGIQEGLKTDEAKSSADPDLSTKLPDDSNTLFDVAPFE
HRSETPMPYQNSDMDMKSGGHASYPEELTLYYLDPQGGMQGPFLGADIISWYEDGYFGLE
LPVRLSQAPDDVPFRPLVEVMPHLGQKPQSHPPALCDENAESLDSAQSKFEAAIPTPASS
GKGDQASKWDSESNAVDPKRSDHEASLPSRTGWLSSPETGKDIANISNRQQHIPESVPQD
AEEVLYTGRPNSSIGQSVRDLENDRADFQLASRDPHSGVGEANLPQHDVPRESDLSPLGL
LWSELEGMHPKQPLSSNVLGLNERRSPKPTAPKDIPPVNIRHGQLSRMNEASSIRDEWPA
NFGRLDGMNDANIPGRIPQVEAEHHLNFEEQLLLQQIRREQLQQEQMMARNNLEFPGPFP
GQVFDSLHQHRQPMNQPLSDVEHLLRVQFELDQQQQRRQQLQQEQHQRQLQQQRQAQLLQ
QQQQQQQQQQQMILEQLLQQQLQGSNFGPANMVDQVLLREHVLNELHQQPHHLQRQHDAA
IEQLIQAKFGHGLHREHHNDMLDVLSRPNQRQMLPLEQQILLGLQHEQLQSQQLANALRQ
HSGREEERHLSGVWPMDDAAQFIRPGTSPNQGHASRHGRFDLLENLQRSSSFEQHEPLDR
SLSLHERLHRGGQGIHSLERSGSLPGGGPVPNPDVINALARHHGLGQLETHGDLYSLGQM
PMLPSGVHPQQHRLQEQHSGSHLGRLERHWSDANGQLQNSLMESSRINQLQIEAEKQRRN
VEMNLAADNPHAWAALMNKERNAEQDLSDMIHKKLVLQSQQSLGFPDVPVPASFGRKDHF
AQPVVENPLRSPVDRLSFEESLAERSLFSKTGQSAQEGSANLDSLTNSIENSGKYNLRSG
SGSMLEQKHFLGIDDVQRDFSDVTGGRASANQLVGSVNELTRGKKQGSSVNLAGDDTNFS
EEAVNNWSDSGISKGSSHSLLKRSANQHPATSQAVSTDLSTIRMKKAGLASSDENKMEPG
VVSSVAQAMETSVPSNKETGAYSMPSATNNPDASGPSFSEALKSKKPPLQYDTSESADGG
PGGKGAKKKAKKGKQIDPSLLGFKVHSNRIMMGEIVRDD
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaggaagctggatcgacccgccgcgctcgggaaagatgggttgtcgcttggg
atcgaggaggacagggccgccgccgccgccatggggttcgtcgacgactccaaagatcag
ctgcacctggataacagcattcctctgtctcctcagtggctctacgccaaaccggctgat
ggaaagatttcactgcctcatgggtcctcctttgagcctgctgaaagggaagtgaggatg
ctggaaggaactgttgataggaaagaacgaaggcggaatatatttgatgctgacagtagt
cttcgttggcttgaagaggagagggaaacaagcttgcttgggaggagggagcgcaagaag
gaagtggagcgggatgttgataaccgtaaaattgatcgtcgatctgacaatgtttctgca
agggataacactgattcacgtgcacctcctgcatctgataggtggaatgatggttccacc
cgtaccttggggaatgagggtcgccgtgatggaaaatggtcaacaagatggggacctgat
gacaaggagaaggactctaggtcagaaaagaaggctgacgcagaaaaggatgaaacacat
gctgaaaagcagacatttacaggaaggcttctgtctgagtctgattcccgtgataaatgg
aggcctcgtcaccgtcaggaaagtcattctgccgggactgcaacataccgcgctgctcca
ggctttggatcggagaaagggcgtgtaaaggactcaaatgttggctttgcccctggaaga
ggcaggggaaacccaaactcagtcacatccttcagccggccatcatctgcaggaccaatt
ggtgctccagctgtgcacgggaagtctgcaaaagctgctggtagtttccgctacccaaga
gggaagcttctggatatatacaggcaaaaaaatatgatgtcatcctttgatgatgctaaa
ctggaggaaattccttccatcacactctctacttcttccaaaccactagcctttgttgca
ccggatactgttgaagaggctcttctggaagatattagaaagggtaaagtcattagcagc
gagggaagcaatgcaactggaaacaagaaagagagggcaaaagagcttgaagaactggct
tctggtattgatgacgacaaggaaaaggctgctgttgcatttggtgggttgggtcaagaa
ggatcttcaggtttaatctcggagaaggatgccttctatgacaaccgtacgctttctagt
ggtgttggtacatctccaccaaagagacctatggaggaaaatgctggcagtaatgagtat
ggtattactggcattcaggaaggtttgaaaactgatgaagccaagtcaagtgctgatcct
gatcttagcactaagctaccagatgattcaaacactctgtttgatgtggcaccctttgag
catcgttcagaaacccctatgccgtaccaaaacagtgacatggatatgaaatcaggtggc
catgctagttacccggaggagttgacattatattatctggatccacaaggaggcatgcag
ggtccatttctgggtgctgacataatctcctggtatgaagatgggtactttggtttggag
ttacctgtgcgtttgtctcaggctccagatgatgttcctttccgcccacttgttgaagtc
atgccacaccttggacagaaaccgcaatctcatccgcctgcactctgtgatgaaaatgct
gaatctttggattctgctcagagtaaatttgaggctgcaatccctactcctgcttcttct
gggaaaggtgaccaagcttccaaatgggattctgaaagcaatgcagtcgatcctaaaaga
agtgatcatgaagcatcattaccttcgcgtactggttggttatcttcacctgaaacagga
aaggatatagcaaatatcagtaatcgccagcagcacattcctgaatcagttcctcaggat
gctgaagaagtgttgtacactgggaggcctaatagcagcattggtcaatccgtacgggat
ctagagaatgaccgtgcggatttccagttggcatcacgtgatcctcattctggggtggga
gaagctaatctgccgcagcatgatgtcccaagagagagtgatctgagtcctcttggcttg
ctttggtctgagctggaagggatgcatccaaagcaacctctctcatcgaatgtacttggt
ttaaatgagcgtagaagtcccaagcctacagcacccaaggacattccacctgtaaacatt
agacatggacaacttagcaggatgaatgaagcttccagtattcgtgatgaatggcctgca
aactttgggcggttggatggtatgaatgatgcaaatattccaggcagaatccctcaggtt
gaggctgagcatcatttgaattttgaggagcaactgctgcttcaacagatccgaagggag
caactgcagcaagagcaaatgatggcccgtaacaatttggagtttcctggtccgtttcca
ggccaggtgtttgattctttgcaccaacaccgacagcctatgaatcaaccactttctgat
gtggagcatcttttgagagtccagtttgaacttgaccagcagcagcaacgtcggcaacag
ctccaacaagagcagcaccagaggcagctgcagcagcaacggcaagcccagctcttgcaa
cagcagcaacaacaacagcagcagcagcaacagatgattcttgagcaactgttgcagcag
cagttgcagggttcaaattttggaccagcaaatatggttgatcaagtcttacttcgggag
catgtattaaatgaactgcatcaacaaccacaccatttacaaaggcagcatgatgcggcg
attgaacaactaattcaagcaaaatttggccatgggcttcatagggagcatcataatgat
atgttggatgttctttcacgtccaaatcagagacagatgcttcctttggagcagcaaatt
cttttaggtcttcagcacgagcagcttcagtcacaacagctggctaatgctctgaggcaa
cattcaggcagggaggaagaaaggcacttaagtggggtctggccgatggatgatgctgcc
cagtttatccgcccaggaaccagtccaaatcaaggccatgcatctcggcatggtcgtttt
gatcttctggagaaccttcagagatcctcatcgtttgagcagcatgaacctcttgatagg
agcttgtccttgcatgagcgtttgcataggggaggccaaggtattcactcactcgagcgg
tctggttctttgcctggtggtggtcctgtaccaaacccagatgttataaatgccctagca
cgccatcatggacttggtcagttggaaacacatggtgatttatattctttaggccaaatg
cctatgcttccttcaggtgttcatccccagcaacataggcttcaggagcagcattctggt
tctcacttaggaaggctggaaaggcactggtcagatgcaaatggacaactgcaaaatagt
ctaatggaatcttcacgcatcaaccagttgcagattgaagcagagaagcagaggaggaac
gtggaaatgaaccttgctgctgacaacccacatgcatgggcagcacttatgaacaaagag
aggaatgcagaacaagatttgagtgatatgattcataagaaacttgtccttcagtcgcaa
caatctttgggcttccctgatgttccagtgccggcatcatttgggcgtaaagatcacttt
gcacagcctgttgtggagaatcctttgaggtccccagtggacaggttgtcttttgaggaa
tctcttgcagaaaggtcacttttttcaaaaacagggcagtcagcgcaggagggatcggcc
aaccttgatagtttaaccaacagcattgagaacagtggaaaatataaccttagatcaggc
tctggatcaatgcttgagcagaagcattttcttggaattgatgatgttcaaagggatttt
tcagatgtcacaggtggcagagcgtcagctaatcagttggttgggagcgtcaatgagttg
actaggggaaaaaagcagggttcaagcgtgaacttggctggggatgatactaatttttct
gaagaagctgttaacaactggtctgatagtggcatatcaaaagggagctctcactcctta
ctaaaacgctctgcaaaccaacatcctgctacatcccaggcagtttctacggatctatca
acaatcaggatgaagaaggcaggccttgcgtcctctgatgagaataagatggaaccaggt
gtcgtctcctcagtagcccaggctatggaaacctctgttcctagcaacaaagagacaggg
gcgtatagcatgccatcagccaccaacaatccagatgcctctggtccttcattcagcgaa
gcgctgaagtcaaagaaaccaccgttgcaatatgatacctcagaatctgctgacggtggc
ccaggtggtaagggtgcaaagaagaaagcaaagaaaggaaagcagattgacccttctctt
cttggcttcaaggtccacagtaaccggatcatgatgggcgagattgttcgagatgattag
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integrated database retrieval system
