Setaria viridis (green foxtail): 117857413
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Entry
117857413 CDS
T07951
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
svs03009
]
117857413
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117857413
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
Pre-60S particles
Helicases
117857413
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
YaaC
Motif
Other DBs
NCBI-GeneID:
117857413
NCBI-ProteinID:
XP_034595951
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All DBs
Position
5:complement(8944456..8948193)
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AA seq
642 aa
AA seq
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MATSTPAAAAAARGALTDQKFSEMSPALSAEVVEALHRGGFRRCTPVQAATIPHLLSHKD
VAVDAATGSGKTLAFIVPVVEILRRRSSPPKSHEVLAVIVSPTRELSSQICNVAQPFFAT
LKGVSSMLLVGGLNINAELKRLEEEGANILVGTPGKLFDIMQREGTLDYKNVEILILDEA
DRLLDMGFQKHINFILSKLPKLRRTGLFSATQTKAVADLSKAGLRNPMRVEVKTETKLTS
EDAGQQELGPSKTPLGLRLEYMMCEASKKSSQLVDFLVQNSGKKIMVYFATCACVDYWAV
VLPLLNSLKGSPIIPYHGKMKQGPREKALASFSALSSGILVCTDVAARGLDIPSVDLIVQ
YDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPKEDTYVEFLKLRGVPLTERECPSNTEDV
VPQIRSAALEDRNVMEKGLRAFVSFIRAYKEHHCSYIFRWKDLEIGKLAMEYGLLQIPFM
PEVKHHSLSLEGFIPVDDVDVTQIKYKDKVREKQRKKALKRKAEEEAQNPKPEKRRAREK
PEKPKRKKTGKQRQSVQTKEDLDELAHEYRLLKKLKRGDIDEDEYEKLTGFGDSDGEASD
GKASDLDKGKERGSKVKLKQKGKARGGSRKFEGKSKMRSKRR
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggcgacatccacgccggcggcggcggccgccgcgcggggcgcgctgacggaccagaag
ttctcggagatgtcacccgcgctatccgcggaggtggtggaggcactacaccgcggcggc
ttccggcgttgcacgcccgtgcaggcggcgaccatcccccacctgctgtcgcacaaggac
gtcgcagtcgacgccgccaccggctccgggaagacccttgccttcatcgtccccgtcgtc
gagatcctccgccgccgctcctccccgcccaagtcccacgaggttcttgctgtcatcgtc
tctcccacaagagaattatcatcgcagatatgcaatgtggcacagcccttcttcgcgaca
ctgaagggcgtgtcgtccatgctcctggttggtgggctgaacatcaatgcagagctcaag
agattggaggaagagggcgcgaacatattggtgggcactcctgggaagctgttcgatatt
atgcaacgcgaaggcactctagattataagaatgttgagattttgatcctggatgaggct
gataggctcttggatatgggattccagaaacatattaatttcatactttcaaagttgccg
aagcttaggaggactgggctgttctcagctacccagacaaaagctgttgcggatctttcc
aaagcagggttgaggaatcctatgagggttgaggttaagacagagacgaagctgacaagc
gaagatgccggtcagcaagagcttggtccatccaaaacaccattggggcttcgattggag
tatatgatgtgtgaagcatcaaagaagtcatctcagcttgtggatttccttgttcagaat
agtggaaagaaaataatggtatattttgcaacatgtgcttgtgtagattactgggctgtg
gttcttccactgcttaactcactaaaaggttctccaataattccttaccatgggaagatg
aaacagggacctcgagagaaagctttggcgtcattttctgctctttcaagtggtattcta
gtctgcactgatgttgcagcaaggggccttgacataccaagtgttgatctgattgtgcag
tatgatccacctcaagatcccaacgttttcatacatagagctggccgaactgcacggtat
gatcaagaaggagatgctattgtatttctcttaccaaaggaggatacttatgttgagttc
ttgaagcttcgaggtgttcctcttacagaaagggagtgtccctcaaacactgaagatgtt
gtgccacagattagaagtgctgcactcgaagatcgcaatgtcatggagaaaggacttaga
gcgttcgtttcattcattcgagcatacaaggagcaccactgctcttacattttcagatgg
aaagatcttgagattggaaagctagctatggagtatggtttactccagatcccatttatg
ccagaagtgaagcaccattctctttcactggaaggatttattcctgttgatgatgttgat
gttacacaaatcaagtacaaggataaagttcgagaaaagcaacgcaagaaggcattgaaa
aggaaagcagaagaggaagctcagaacccaaagccagagaagagaagagctcgggagaag
cctgagaaaccaaagcgaaagaagacaggcaagcagcggcagtcagtccaaacaaaggag
gacctggatgagctggcgcacgagtaccggctcttgaagaagctgaagcgcggagacatt
gatgaagacgagtatgagaagctcactggttttggagactctgatggcgaagcctctgac
gggaaagcaagtgacttggacaaggggaaggagaggggtagcaaagtgaaactcaagcag
aaagggaaggctagaggagggtctaggaagtttgaagggaagagtaaaatgaggagcaaa
aggagatag
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