Setaria viridis (green foxtail): 117857476
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Entry
117857476 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K24155
rabconnectin-3a
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
117857476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
svs04131
]
117857476
Membrane trafficking [BR:
svs04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
117857476
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
117857476
RAVE complex
117857476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_TEP1_C
EIF3I
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
117857476
NCBI-ProteinID:
XP_034596035
LinkDB
All DBs
Position
5:24558208..24573084
Genome browser
AA seq
2469 aa
AA seq
DB search
MGERDALPPLPLALGPPHLIPPAPTRDPRAIAFLPDLGGLSWVAYAAGSFLVVSHIPSPY
RDDTSDGAGDDGCSPFFRQVIDLRAPVSAVAWCGSGSGEVAAAADNSVSIFQPAPAASSP
GSFGWLLRWSITETFAITAVAWTSAGDGIVAVGAGVSMWTRAQSSWQLAWRSIPKVPQSL
VSTTRFVQGPVATVETVAPAQCSVPVLVFLSDAKRGLEQAELVHLQPVCMIQWRPCSLCF
SDRSEVRREILMTCCLDGTVRLWSEDELVKSKKQRGLQISFSVIAVIEVNNTLNGVLGVD
ITVRWSMESGSVVSRDEEGKFELFSGDSRESQVGKCEWLVSVGPGPCVNFWAIHCLDDVF
PPRYPRITSWKQSKLLGSWGESYVKSDPQKYLEQSIFVEAVMSRRLCSGPPTTCSLLHLL
PDDSFVWSALSNSLVPDSGTHVSNGSANSFSCCLNKPVKQDGHKGSIRQVSVHPYCCEIE
LAVSMDSNRMLFFWSLSTFSTLIPTLNAPTYPLWNLLCKFDLRNISEDVQYSCLCWAPSV
SHDNRFLVLGGESGADCFIVGIKKEVLSCQRIFTIPFLGERNVEVPPDSIHTIPLASKCS
GCFANNSFLVVCIWRKSFQAFSWKVVLHSENQFDSGRCSCGFDESSLSITSQGRHVTCFN
NETFSAVVYEASSVFPSSLEGEYPTCISVVPLNNTVLPIQHEPYRAVPGYHIATGCSDGT
VKLWKMSCADNPLQTEKESHIWELVGMYGAHRGPVSMVVLSSCGRIVTVCRNLKKNSTSI
HIWEAVKLIGDGSFLLEDALILQDYIVGIEGLSLGDGRFLLAVCLPNELCIYSHKHASVQ
NVLHNDNSKEEHLWSCIALSHSHHDIAGFLWGPKGTITLVHENHLSLFSSWLVTGADEYT
TQIRACPIYVHDMLPCANNFNETAFGKFKLPENYNSGTIGSNSVLRTDQDDSHCSHSLWN
LLDIADKLSGPVASYHPRALVQYLYSGEWKRVNAALQHLIQSMKASEASKVVPKCSSCRK
SCHSIPELPLSEYFVATTSNNISNKDFLWGDDRSNTTFNLLSPSNSFLYVDGNLGTNTTT
SVSQNSEIVELLDKNFSIYGISDTERTQILAISDLMVEITDQSRSSPYKSLDEAGRRFWV
AVQFRQLHALRRSGYSSSSERLHVDSASIAWAFQSDCQDDLLNSVLPLEPTWPEMQKLGI
GLWHTNVSQLRTRMEKLARLQYLKSKDPKDCALLYIALNRIKVLVGLFKISRDEKDKRLY
EFLSRNFQEERHKAAALKNAYVLMGRHQWELAIAFFLLGDDFSSAVNVCAKNLQDEQLAI
VICRLVEGSGGPLERNLISNILLPHAVEKGDNWLSSLLEWILGNYCQSVNRLFGCHPELG
IDESKILGGSNVFSDPEVGQYCAILSTKNVFRNCVGEAVSAKLSKFSFAMASCAMNKCGL
PLEALECLCTNSGIDDKESINIPAGGDHKIFDGMLNPFSVSKNWLSSSVISDIVSNLKVT
MASKYLSRLLRNHLFCSQCNASLSKDKVLNDYTSRQIEELTQDVTAVISIFDRRFSLKFA
DIAEKILIFCCHDSLLFIAYVLLWGCKSPDVSIDRHGLECCSLRPINYLLLVSFKESCKF
LSRHVVYSSFMCFVLNMELTNITACASKENRKYIMSGLSNYLNASRLLLRFDNGGKNILD
NRSAMLTVMDLLEYIIEFSFSWLYCDIKALLIMINPILAASVKGESFQVLLDGLVHSMRH
RSHDVPLNTEGGMSSASVHKIQLEKSENSNLSIDEKWNLIGASLWIRLTSVMQLYLREFV
EKERLEHETGGSDSEFKGHFSSVAAKFAMDSIHFVSSSLVKVHASFLRKNLPTHSHSSVL
FWLESSQQWSDSNGYDQLSRIFQLANNENMEALFSNLWEISVNSVDICNAFVNEGVKCFS
LSSINVTRSWKDIRGTGVECKVSSTQRSGEEHKHGLSSNNNDQGQGFTDRASSNGEVFPE
TKRKESIVQKDFQSPRELLRRSGELLEAICLNSINEKQAAIATNRKGLVFFNWSEKKHCK
NFAEYVWSGSDWPLDSWAGCESTPTPTFISSGAGLGRKKGSQPGSGGATIGLGSLAKPGR
DLTGGGAFGIPGYAGIGASGFGWGEPEEFEDFVDPPATLGNIHSRALSRHPSLPLFLVGS
SNTHVYLWEFGKDSAMATYGVLPAANIPPPYALASISSVQFDYYGQRFATAALDGTVCTW
QVEVGGRSNVHPTDSSLCFDIHASDVSYVSASGSVIASAGSNSNGANVVIWDTLSPPGTC
QTSIMCHEGGARSLSVFDSDRGCGSISPLVVTGGKSGDVALHDFRFLSTGKSQHNRISME
HGVKAPSTHDTKSGTSGGTTNGMVWHIPKAHLGSVTKVTTIPNTSLFLTGSKDGDVKLWD
AKNSQLVFHWPKLHERHTFFQPTSRGFGGVVRAAVTDLQVLSHGFISCGGDGSVKLVQLK
DDLATVHQQ
NT seq
7410 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagcgagacgcgcttccgccgctgccccttgccctcggcccgccgcatctgatt
ccgccggcgcccacccgcgacccccgcgccatcgccttcctccccgacctcggtggcctc
tcttgggtcgcctacgccgccggatccttcctcgtagtatcccacatcccttccccttat
cgggatgacaccagcgacggcgctggggacgacggctgctccccgttcttccgccaggtc
atagacctccgcgccccagtgtccgccgttgcctggtgcggcagcgggagcggagaggtc
gccgccgccgcagacaactccgtctccatcttccagccggcgcccgctgcctcttcccca
ggttcttttggttggctcctgagatggtctatcaccgagacatttgccattactgctgtg
gcatggacgagtgcgggcgatggcattgtggcagttggcgcaggtgtttccatgtggacc
agagcgcagtcctcctggcagctcgcctggaggtctattccgaaggtgccacaatccctt
gtctccaccacccggtttgtgcagggccctgtcgcgacagtcgaaactgttgctccggct
cagtgcagtgtgcctgttcttgtgtttctgagtgatgccaaaaggggcctggagcaagcc
gagcttgtgcacctgcagcctgtttgcatgatccagtggcgaccctgttcgttgtgtttc
agtgatcggtctgaggtcaggagagagattctcatgacttgctgcttagacgggactgtc
cggctttggagtgaagatgagttggtcaagtcaaagaagcagcgtggtttgcaaatctca
ttcagcgtcattgcagtaattgaggtgaacaacactctgaatggagtccttggagttgat
attactgtcagatggtctatggaatctggtagtgttgtttcgagagatgaagaaggtaaa
ttcgagttgttttcaggtgattcgagggagagccaagttggcaaatgtgagtggcttgtg
agtgttggaccagggccttgtgttaacttttgggctattcattgtctggatgatgtattt
ccaccgaggtacccacggattacttcatggaaacagagcaaactgctgggtagctggggg
gagtcttatgttaaatcagatcctcaaaaatatttagagcagtcaatttttgttgaggct
gtcatgtcaagaaggctatgttctggcccacctacaacatgctctttgcttcatttgctg
cctgatgattcgttcgtttggtcagccttatccaacagcctggtacctgattctgggacc
catgtttcaaatgggtctgctaatagtttctcatgttgtttgaacaaacctgtcaaacaa
gatgggcataagggtagcatcagacaggtgtctgtccatccgtattgctgtgaaatagag
ctagccgtttcaatggattcaaacagaatgttatttttctggtctctgtcaaccttttca
actctcataccgacgttgaatgcacctacatatcctttatggaatcttttgtgcaaattt
gatttgcgtaacatttctgaagatgtgcaatactcatgcttgtgttgggcgccttctgtt
agtcatgataatagatttcttgtccttggaggtgaaagtggagctgattgtttcatagtt
ggaattaagaaagaggttctttcatgccagaggattttcacaatccccttccttggagag
agaaatgtagaagttccacctgacagcattcataccataccattggcttctaaatgtagt
gggtgttttgcaaacaacagctttctagtagtatgcatatggaggaagagcttccaagct
ttctcatggaaagtagtcttgcattcggaaaatcaatttgacagtggaagatgttcgtgt
ggttttgatgagagctctctttctatcacaagccaagggaggcatgtaacttgctttaac
aacgaaactttttcagcagttgtttatgaagcttcttcagtttttccttctagcctggag
ggagaatatcccacatgcatttctgtagtgccgctgaacaatactgtcttgcctatacaa
catgaaccttacagagctgttccaggttatcatattgctactgggtgctctgatggcact
gtgaaactttggaagatgtcttgtgcagataaccctttgcagactgagaaagagagtcac
atctgggaactagtaggcatgtatggtgctcaccgaggaccagttagtatggttgtactg
tcaagttgtggtagaattgttactgtttgcagaaatttgaagaagaatagcacctctatt
catatctgggaagcagttaaactcatcggggatggcagttttctgctagaagatgcacta
atattgcaagactatattgttggtatagaggggctatccttaggtgatggacgatttcta
ctggcagtttgtctacctaatgagctgtgtatatattctcataagcatgcttctgtccag
aatgtgctgcacaatgacaattcaaaagaagagcatctttggagctgtattgcattatca
cactctcatcatgacattgctggctttctttgggggccaaagggaactatcacgcttgtt
catgagaaccatctttcactcttcagttcatggttagtaacaggagctgatgagtacact
acccagatacgtgcttgcccaatatatgtgcatgatatgttaccatgtgctaacaatttc
aatgaaactgcttttggtaaattcaagttaccagaaaattacaacagcgggactattggt
agcaacagtgtcttgcgaacagaccaagatgatagtcactgttctcatagtttatggaac
ttgttggatatagctgataaactgagtggacctgtggcatcgtatcacccaagagcactt
gtacagtatctttattcaggtgaatggaaacgtgtgaatgctgctctgcagcatcttatc
caatccatgaaagcgagtgaagcatcaaaggtcgtgccaaagtgcagttcatgccgtaaa
tcatgccacagtattccagaacttcctttgtctgaatactttgtagcgacaacatccaac
aacatttctaacaaagattttctgtggggtgatgatagaagtaacacaacctttaatttg
ctgtcaccttcaaattcatttctttatgtggatggtaatttaggtacgaacactaccact
agtgtgtctcaaaactcagagatagttgagctccttgataagaacttcagcatatatggc
ataagtgacactgagagaactcagatacttgcaatttctgatcttatggttgaaatcact
gatcagagccgttcctctccctacaaaagccttgatgaagcaggaagaaggttctgggtt
gctgtgcagttccgacagcttcatgctcttaggagatctggatattcatctagtagtgaa
cggctccatgtggattctgcttcgatagcgtgggccttccaatctgattgtcaggatgat
ctacttaattctgtgcttcctttagagccaacctggccagagatgcaaaagcttggtata
ggattatggcataccaatgtgtcccagctaagaacaaggatggaaaagttagcaaggttg
caatatcttaaaagcaaggaccccaaggattgtgctctgctctacatagcattgaacaga
ataaaagtgttggttggtctcttcaagattagcagagatgaaaaagataaacgtctatat
gagtttctctccagaaacttccaggaagaaagacacaaagctgctgctctaaaaaatgca
tatgtactaatgggaaggcatcaatgggagcttgctatagcatttttcctgcttggtgat
gatttttcatcagcagtcaatgtttgtgcaaagaaccttcaggatgaacagcttgctatt
gtaatttgtcggcttgttgaaggatccggagggcccctggagcgtaatctcatttctaat
atccttcttcctcatgcagttgagaaaggagacaactggctttcaagtctgcttgagtgg
attttagggaactattgtcagtctgtcaatagattatttggttgccatcccgagttgggg
attgatgagtccaaaatccttggtggttcaaatgtgttttcagacccagaagtgggtcag
tactgtgcaattctctcaacaaaaaatgttttcagaaactgtgttggtgaagctgtatct
gcaaagttatctaagttttcatttgcaatggcttcatgtgccatgaacaagtgtggacta
cctcttgaagcacttgaatgcctatgtactaactcgggcatagatgacaaggagagcata
aacatacctgctggtggagatcacaagatttttgatggaatgctgaaccctttctctgtt
tctaaaaattggctatcttcatctgtcattagtgacatcgtgtccaaccttaaagtaact
atggcttcaaaatatctatctcgccttctgagaaatcacttgttctgttcacaatgcaat
gcatcattatctaaagacaaggtccttaatgactacaccagtcgtcaaattgaagaactt
acccaggatgtcacagcagtaatatcgatattcgatagaaggttctctttaaaatttgct
gatatagctgagaagattctaatcttttgttgccatgatagtttattgtttattgcgtat
gttttgttatgggggtgtaaatcaccagatgtctcgattgatcgtcacggtcttgaatgc
tgctctctccgtccgattaattatctgttattggtttcattcaaggagagctgcaagttt
cttagtcgtcatgttgtctactcctccttcatgtgtttcgttctgaatatggaactcaca
aatattactgcatgcgcatctaaagagaatcgtaagtacattatgtcagggttgtcaaac
tacctgaatgccagcaggttgcttctaagatttgacaatggtggaaaaaatattctagat
aacaggtcagctatgcttacggttatggacctgcttgagtacattatagagttttccttt
tcttggctgtattgtgacataaaggcattgcttatcatgatcaatccaatcctagctgct
tctgttaaaggggagtcctttcaagtactattagatgggttggtgcattctatgcgccac
agaagtcacgatgtgccattgaatacagaagggggaatgtccagtgcttcagtgcataag
atacagctagagaagagtgaaaattcgaatctttcaattgatgagaaatggaatttgata
ggtgcttctttatggattcggttgacatccgtaatgcaactttatttaagggagtttgtt
gaaaaagagagacttgaacatgaaactggtggtagtgattcagagtttaagggtcatttc
tcttcagttgctgcaaagtttgctatggattccatacattttgtgtcatcttcgttagta
aaagtgcacgcgtcattcttgaggaagaatttaccaacacattcacattctagtgtgctc
ttctggttagagtcatctcagcaatggtcagacagcaatggttatgatcagctttcaaga
atttttcagcttgcaaacaatgagaatatggaggcgttgttttctaatttgtgggaaatt
tctgttaattctgtggatatttgtaatgcttttgtgaatgaaggagttaagtgcttttcc
ttaagcagcataaatgttactagatcttggaaggatataagaggtactggggttgagtgc
aaagttagtagtacccaaagaagtggagaagaacataagcatggacttagctcgaataac
aatgatcaaggacaaggatttactgacagggcctcttctaatggggaagtctttcctgaa
actaaaaggaaagagtcgatagtacaaaaagattttcaaagcccaagggaacttctaagg
agaagtggggaacttcttgaggcgatatgtcttaactcaatcaatgagaaacaagctgct
attgctactaatcgaaagggccttgttttcttcaactggagtgaaaagaaacattgcaag
aattttgcagaatatgtctggtctggatctgattggcctttagatagttgggctggttgt
gaatctacaccaactccaacttttatttcatctggtgctggccttggcagaaaaaaagga
tcacaacctggttcaggtggagcaactattggtttgggttcattggcaaaacctggaaga
gacctaactggcggtggagcatttggaattccaggttatgctggtattggggcctctggg
tttggctggggtgaacctgaagaatttgaggattttgtcgatcctccagcaacacttggg
aacatccattcaagagcattgtcccgacatccttcgttaccattatttcttgttggttcg
agcaatacacatgtgtatctatgggagtttggtaaagatagtgccatggctacatatggt
gttctgcctgctgctaacattccaccgccttatgcactggcctccatatcatctgttcaa
tttgattattatggacagcggtttgccactgctgcattagatggtaccgtttgtacatgg
caagttgaggtgggcggaagaagcaacgttcatcctacagattcatccctatgctttgat
atccatgcctcggatgtctcttatgtgtctgcaagtggatcagttatcgcttctgctgga
tctaattcaaacggtgcaaatgttgttatctgggatacactgtctccacctggcacgtgt
caaacttctattatgtgtcatgaaggaggagcacggtctctttcagtttttgatagtgat
agaggctgtgggtccatctcaccactggttgtaactggtgggaaaagtggagatgtagct
ttgcatgatttccgcttcctttctactgggaagtcccagcataatagaatctccatggag
catggtgtcaaggcaccttccacgcacgataccaaatctggtacttctggtggtaccact
aatgggatggtctggcatatacctaaggctcatctaggaagcgtcaccaaggtaacaacc
atcccaaataccagcttgttcttaactggaagcaaagatggagatgtaaagctttgggat
gcaaaaaattcccagctggtctttcactggccaaagttgcatgaacggcacacctttttt
caaccaacttccaggggcttcggtggtgttgttagggctgcggtaacagacctacaggtt
ctgtctcatggtttcatttcatgtggaggtgatggctctgtgaagcttgttcagctaaaa
gatgatctcgctacggtacatcaacaataa
DBGET
integrated database retrieval system
