Setaria viridis (green foxtail): 117857738
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Entry
117857738 CDS
T07951
Name
(RefSeq) probable small nuclear ribonucleoprotein F isoform X1
KO
K11098
small nuclear ribonucleoprotein F
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117857738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117857738
03041 Spliceosome [BR:
svs03041
]
117857738
03032 DNA replication proteins [BR:
svs03032
]
117857738
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
117857738
Spliceosome [BR:
svs03041
]
Complex A
U1 snRNP components
Sm proteins
117857738
U2 snRNP components
117857738
Complex B
U1 snRNP components
117857738
U4/U6.U5 tri-snRNP components
117857738
Complex C
U2 snRNP components
117857738
DNA replication proteins [BR:
svs03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
117857738
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
117857738
NCBI-ProteinID:
XP_034596463
LinkDB
All DBs
Position
1:complement(6109068..6112564)
Genome browser
AA seq
86 aa
AA seq
DB search
MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL
GEILIRCNNVMYLRGVPEDAEIEDAE
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgtgccagttaacccaaaacctttcttgaacaacctgacagggaagcctgta
attgtcaaactcaagtggggtatggagtacaaaggatatcttgtttctgtggattcttat
atgaaccttcagcttgctaacacagaggagtacattgatgggcaattctctggaaacctg
ggagagattttgatcaggtgcaacaatgttatgtacctccgaggtgttccagaggatgcg
gagatagaggatgcggagtga
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