Setaria viridis (green foxtail): 117857792
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Entry
117857792 CDS
T07951
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117857792
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
svs01009
]
117857792
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117857792
03036 Chromosome and associated proteins [BR:
svs03036
]
117857792
Protein phosphatases and associated proteins [BR:
svs01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
117857792
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
117857792
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
117857792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Me-amine-dh_H
ComGF
Motif
Other DBs
NCBI-GeneID:
117857792
NCBI-ProteinID:
XP_034596541
LinkDB
All DBs
Position
5:complement(27353097..27360255)
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AA seq
514 aa
AA seq
DB search
MMNGAAAPERSPSASPPPPAQAQAPPSPSPTQPLDWRFSQVFGERSAGEEVQDVDIISAI
EFNKSGHHLATGDRGGRVVLFERTDVKDHACRKDAEKADYSISRHPEFRYKTEFQSHEPE
FDYLKSLEIEEKINQIKWCQAANGALFLLSTNDKTIKFWKVQEKKIKKVSEMNLDRSTAP
SNGSPGGVGSLSPSLSNGNALKPGPFALLRMPVVVTSQETSLAASCRRVYAHAHDYHINS
ISNNSDGETFISADDLRINLWNLEISNQSFNIIDVKPTNMEDLTEVITSAEFHPTHCNTL
AYSSSKGSIRLVDLRQSALCDTHSQIFEQHEAPGSRSFFTEIIASISDIKFSKDGRHILS
RDYMTLKLWDVKMNSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCQSGDGLQVATGSY
SNIFRVFGVGTGSNEASTLEATRNPTRRQLQNPTRAARSLSTLTRAVRRGGESTGIDANG
NSYDLSTKLLHLAWHPSENLIACAAANSLYMYYA
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacggcgccgcggcaccggagcgctcgccctcggcctcgcccccgcccccggcc
caggcgcaggcgccgccctcgccctcgccgacgcaaccgctcgactggaggttctcccag
gtgttcggcgagcgcagcgccggggaggaggtccaggatgttgacatcatctcagcaata
gagttcaacaaatcaggacatcatcttgccactggggatagaggtgggcgagttgtattg
tttgaaaggacagatgtcaaagatcacgcttgtagaaaagatgctgagaaagctgattat
tctatcagcaggcaccctgaatttcgctacaaaactgagtttcaaagccatgaaccagag
tttgattaccttaagagcttggaaatagaagagaagatcaaccaaataaagtggtgccaa
gcagcaaatggcgcattgtttctgctgtccacaaatgacaaaacaataaagttttggaag
gtccaagaaaagaagataaaaaaggtatctgagatgaatttggaccgttcaactgctcct
tcaaatggtagtcctggtggtgtgggctctctgagcccatctctctcaaatggaaatgct
ttaaaacctggtccatttgctttgcttcgcatgcctgtggtagttacaagccaagaaaca
agtcttgctgcaagttgccgaagagtatatgctcatgcacatgactaccatataaactcc
atatcaaataacagtgacggcgaaacatttatatcagctgatgatttgcggataaatctt
tggaatttggaaatcagcaatcagagtttcaatattattgatgttaagcctacaaacatg
gaggatctcactgaggtgataacatctgctgaattccatcctactcattgcaatacatta
gcttatagtagctcaaagggctccattcgacttgttgatctgcggcagtcagcactttgt
gacactcattcgcaaatctttgagcagcatgaggccccaggttcaagatcatttttcact
gagattatagcctcaatttcagacataaagttttccaaggatgggaggcatattctgagt
cgtgactacatgactctgaagctttgggatgttaagatgaattctggtccagttgcaaca
ttccaggttcatgagtatctaaggcctaagttatgtgatttgtatgaaaatgactcaatt
tttgacaaatttgaatgttgtcaaagtggtgatggattacaagtagcaactggttcctac
agcaacattttccgtgtgtttggtgttggtactggtagcaatgaggcatcaacacttgaa
gcaactcgaaaccctacaaggaggcagctccagaatcccacaagggctgccagatcccta
agtactctgacaagggctgttagacgaggtggagaaagcaccggaatagatgccaatgga
aattcctatgacctgagcacaaagttgctccatttggcttggcacccatctgaaaatcta
attgcatgtgctgcagccaacagcttgtacatgtactatgcataa
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