Setaria viridis (green foxtail): 117857885
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Entry
117857885 CDS
T07951
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117857885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117857885
Enzymes [BR:
svs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
117857885
DNA repair and recombination proteins [BR:
svs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
117857885
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
COMM_domain
Motif
Other DBs
NCBI-GeneID:
117857885
NCBI-ProteinID:
XP_034596675
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Position
5:38620588..38625663
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AA seq
335 aa
AA seq
DB search
MPLLVRGASLLRLYHRGCLIPGIKHIVSNMSRTASQRGYHGRSSEPWTRLSHRERKPQWF
AYNPRTMRPPPLSSDTNSMKILSYNVNGLQTVVESGFSADQLFGRENFDVLCLQETHLKE
GNVDHFKNLVQDFDNSYWSCSVARLGYSGTAVISRVKPISVQYGIGIPAHDQEGRVITLE
FDGFYLINAYIPNSGRGLKRLNYRVNDWDLCFSDFIKKLECSKPVIVAGDLNCARQSIDI
HNPQAKTEAAGFTIEERGSFEENLTSKGLVDTFRKQHPNAVAYTFWGENQRISNKGWRLD
YFLASESIVDKVHDSYILPDVSFSDHSPIGLVLKL
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgctggtgcgcggcgcctccctcctccgactctaccatcgtggctgcctgatt
cctggaatcaagcacatcgtgtcgaacatgagcaggacagcttctcagcgtggatatcac
ggccggagctctgagccttggactcgccttagccacagagagaggaaacctcaatggttt
gcgtacaatccaaggaccatgaggcctccgccgcttagcagtgataccaattctatgaag
attctgtcctataatgttaatggactgcaaactgtggtagagtctggattttctgcagat
cagcttttcggccgggagaactttgacgtcctgtgtcttcaagagacacacttgaaggag
ggcaatgttgaccattttaagaacctggtacaagacttcgataacagctattggtcatgc
agtgtcgcaaggctcggttactcaggaactgcagtgatttcacgggtaaaaccaatctct
gtccagtatggaattggcatacccgcccacgatcaggaaggcagggttattactttggag
tttgatgggttttacttgatcaatgcttacatcccaaattctggacgtggtttaaaaaga
ttgaattacagggtcaatgactgggatttgtgttttagtgacttcataaagaaactggaa
tgttccaaaccagtaattgttgctggtgatctcaactgtgctcgccaaagtattgacatt
cacaatcctcaagcaaaaactgaggctgcaggtttcacaattgaagagagggggtcattt
gaggagaaccttacaagcaaaggcctcgttgatactttccggaaacagcacccaaatgct
gtggcctacaccttctggggtgaaaaccagcgcatttccaacaaaggctggagactggat
tactttctcgcgtcagaatctattgtggacaaggtccatgattcgtacattctaccagat
gtatcgttcagcgatcatagtccaattgggcttgtgctgaagctgtag
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