KEGG   Setaria viridis (green foxtail): 117858070
Entry
117858070         CDS       T07951                                 
Name
(RefSeq) suppressor of mec-8 and unc-52 protein homolog 1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
svs  Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:svs00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:svs03041]
    117858070
Spliceosome [BR:svs03041]
 Complex B
  Other components
   Complex B specific factors
    117858070
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WDR55 EIF3I WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd LisH_TPL Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_EML NBCH_WD40 Beta-prop_DCAF4 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_Nup120_160 Beta-prop_NWD2_C WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_NUP159_NUP214 Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_SPT8 DUF7165 Beta-prop_VPS8 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st VPS8_N Beta-prop_HPS5 WD40_RFWD3 Beta-prop_IFT122_2nd Mala_s_1-like zf_topless Beta-prop_IP5PC_F Beta-prop_LRRK2 7TMR-HDED
Other DBs
NCBI-GeneID: 117858070
NCBI-ProteinID: XP_034596947
LinkDB
Position
5:complement(13385095..13390775)
AA seq 517 aa
MASSASTLEIEARDVVKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIDTFIADINAGR
WDAVLPQVAQLKLPRKKLEDLYEQIVLEMAELRELDTARAILRQTQVMGVMKQEQPERYL
RLEHLLVRTYFDPNEAYQESTKEKRRAQIAQAVASEVSVVPPSRLMALIGQALKWQQHQG
LLPPGTQFDLFRGTAAMKQDEEETYPTTLSHQIKFGKKTHPECARFSPDGQYLVSCSVDG
IIEVWDYISGKLKKDLQYQADESFMMHDDAVLCVDFSRDSEMLASGSQDGKIKVWRIRTG
QCLRRLERAHSKGVTSVTFSRDGTQILSTSFDTTARVHGLKSGKMLKEFRGHNSYVNYAI
FTTDGSRVITASSDCTVKVWDTKTTDCLHTFKPPPPLRGGDASVNSVHLFPKNTDHIVVC
SKTSAIYIMTFQGQVVKTFSSGKREGGDFVAASVSPKGDWLYCVGEDMNMYCFSYQSGKL
DHLMKVHDKDVIGITHHPHRNLVATYAEDCMMKIWKP
NT seq 1554 nt   +upstreamnt  +downstreamnt
atggcgtcgtcggcgtccaccctcgagatcgaggcccgcgacgtggtgaagatagtgctg
cagttctgcaaggagaactcgctgcagcagacgttccagacgctgcagaacgagtgccag
gtctccctcaacacggtcgacagcatcgacaccttcatcgctgacatcaatgctgggcgc
tgggatgcggtgctgccccaggtcgcacagctcaagctgccacgcaagaagcttgaggac
ctctatgagcagatcgtgttggagatggccgagctccgagagcttgacacggcccgtgcc
atcctccgccagacgcaggtcatgggcgtcatgaagcaggagcagcctgagcgctacctc
cgacttgagcacctccttgtccgcacatatttcgaccccaatgaggcctaccaagaatcc
accaaggagaagcggcgagcgcagattgctcaagctgttgcttctgaagtctcagtagtc
ccgccatctcggcttatggcattgattggccaggctttgaaatggcagcagcaccaagga
ctattgccgcctggcacgcagttcgatttgttcagaggaactgctgctatgaagcaagat
gaagaagagacataccctactacattatctcatcaaataaagtttgggaagaaaactcat
cctgaatgtgctcgattttcacctgatggtcagtaccttgtttcatgctcagtggatgga
atcattgaagtctgggattatattagcgggaagcttaaaaaggatcttcaatatcaagcc
gatgaaagttttatgatgcacgatgatgctgtgctatgtgttgactttagtagagattct
gaaatgctggcatctggatcacaggacgggaagattaaggtttggcgtatacgaactggc
cagtgcttgcgacgtcttgagcgcgcgcattcgaaaggtgttacaagtgttacattctca
cgtgacggaacccagatattgagtacatcctttgacactactgcgagagtacatggcctc
aagtctggaaagatgctgaaagaattccgaggtcataattcctatgtgaattatgccatc
tttacaactgacggtagccgtgttattacagcttccagtgattgtactgttaaggtctgg
gatacaaaaacaactgattgcttgcatactttcaagccaccacctcctttgaggggagga
gatgcatctgttaattctgtccatctatttcccaaaaatactgatcacattgttgtctgt
agtaagacttcagcaatatacatcatgacttttcaaggacaggttgtaaagactttctca
tcaggtaaacgggaagggggagattttgttgcagcttcagtttccccaaaaggagactgg
ttgtattgtgttggtgaagatatgaacatgtattgctttagctaccagtctggtaaactg
gatcatctaatgaaggtccatgacaaggatgtcataggaattacgcaccatcctcacagg
aatttggttgccacctatgccgaagattgtatgatgaagatatggaagccctga

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