Setaria viridis (green foxtail): 117858071
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Entry
117858071 CDS
T07951
Name
(RefSeq) DNA mismatch repair protein MSH7 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117858071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117858071
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117858071
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
117858071
NCBI-ProteinID:
XP_034596948
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All DBs
Position
5:complement(10225797..10240882)
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AA seq
1219 aa
AA seq
DB search
MQPRRQQQQSILSFLQKPPRDPAGAGEGTPPEKPPRPPAGSVAGIMERLVRPPPRPQPPQ
GSRNQDASQAGHFSGKTLPGRIRVPSDGHSSALSSGSWNGEYGRATMFPKQGSGIIPSQE
PQKYPLRSSTDEFVQASSLVPEFGPNQTPLQARSLFEDFDVQTPSQVSSKKVFLGPAHGA
DTPLTESGSDRTHLQHSAKKFSLVSANDEYTRAATTFVLNSNDTRTEEHLNKLCPGSSDP
LYIKATNLFAEFEANETPLKNHLKNSSLLMNDKHIGAAATIFPELDSSPLKPETPAMRAV
IPRLKRVQEEQGVAANKPCSPLWVSNKKMKSANCSPIEKKDRDEMADSARRKFEWLNPST
IRDANRRRPDDPLYDKSTLFIPPDALRKMSTSQKQYWNIKCKYMDVVLFFKVGKFYELYE
LDAEIGQKELDWKMTVSGVGKCRQVGISESGIDAAADKLVARGYKVGRIEQMESANQAKA
RGSNAVIERKLLNVSTPSTAVDSNIGTDAVHLLALKEVTLSSSSSRVYGFAFLDYAALKI
WVGSLHDDDSSAALGALLVQVSPREIIYETSGLSKETHKAIRKYASAGSVKMQLTPLPGI
DFSDVSQIRMLIHSKEYFTASAESWLSALDCALNRDAIICALGGLIGHLTRLMLHDALKN
GEVLSYHVYKTCLRMDGQTLVNLEIFSNNFDGGSSGTLYKHLNQCVTASGKRLLRRWICH
PLKDIDAINKRLDVVEAFIQNCGLGPTTLGYLRKIPDLERLLGQVKSTVGLSSSIQLPFV
GERILKKRIRTFIMLINGLRNGLDLLNDLQRADHGVSALYKVVEIPTLSSLHELIHQFEK
RVQEEFPCYQDLGVEDSDGDTLALLVGLFVRKASEWSLVINAVSTIDVLRSFAAMTLSSF
GTMCKPHILLKDDVPILRMKGLWHPYAFAESANGLVPNDLTLGQDLSGFNRFALLLTGPN
MGGKSTMMRATCLTIVLAQLGCYVPCTSCELTLADSIFTRLGATDRIMSGESTFLVECTE
TASVLQNATEDSLVLLDELGRGTSTFDGYAIAYAVFRHLVEQVRCRLLFATHYHSLTKEF
ASHPHVSLQHMACMFRARSGAHDVNGEKELTFLYRLASGACPESYGLQVATMAGIPKSIV
DKASVAGQAMRLKIAGNFKSSEERAAFSTQHEEWLRTAMSVIVKDGHLDEDIMDTLFCVC
QELKFHFRKARRASTATDH
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgcggcggcagcagcagcagtccatcctatcgttcctccagaagccgccacgg
gatcccgccggcgccggggagggcacgccccctgagaagcccccgcgcccgcccgcgggg
tcggtcgcgggcatcatggagaggctcgtgcgcccgccaccgcggccgcagccgccgcag
gggagcagaaatcaagatgcttcccaggctggacatttcagtgggaaaaccttgcctgga
agaattcgtgttccctcagatgggcactcaagcgcattgtcctcaggttcctggaacggt
gaatacggcagagcaaccatgtttccaaaacaaggttcgggtatcattccctcacaggag
ccccagaagtacccattgaggtcctccactgatgaatttgttcaagcaagctcactggtc
ccagaatttgggccaaatcagactcctcttcaggctagatccttatttgaagactttgat
gtacaaacaccttcacaggtttcctcaaagaaagtcttcctggggcctgctcatggagct
gatacacctctaacagaatccggttcagatcgaactcatttacagcattcagcaaagaag
ttctcattggtttctgctaatgatgaatatactagagcagcgacaacctttgtgctgaat
tcaaatgatactcgtacagaggaacatttaaataagctatgcccagggtcttcagatcct
ttgtatattaaagcaacaaatttgtttgcagaattcgaggcaaatgaaactccattgaag
aatcacttgaaaaattcctcccttcttatgaatgataaacatattggagcagctgctact
atatttccagaacttgattctagtcctctgaaaccagaaacgccagcaatgcgagcagtc
attcctcgcctgaagcgagttcaagaagaacaaggtgtggctgccaacaaaccatgctct
cctttgtgggtctcgaacaagaagatgaaatcagctaattgttctcctattgagaagaag
gatcgtgatgaaatggctgatagtgcgcgtaggaagtttgagtggctgaatccatctacc
atcagggatgcaaatagaaggcgtccagatgatccactttatgacaagagtacacttttt
attccacctgatgcattgagaaagatgtcaacatctcaaaagcaatactggaatattaag
tgtaaatatatggacgttgtcctctttttcaaagtgggaaaattttatgagctctatgag
ctagatgctgagattggccagaaagaacttgactggaaaatgactgttagtggggtgggc
aagtgccgacaggttggcatttcagaaagtgggatagatgctgctgctgataagcttgta
gctcgggggtataaagttggaagaatagagcaaatggaatctgcaaaccaggccaaagct
agaggatcaaatgcagttattgaaagaaagctgcttaatgtgtccacaccgtcgactgca
gttgatagcaacattggtacggatgctgttcaccttcttgcactgaaagaggttacccta
tcttctagtagttctcgggtctatggatttgctttcctagactatgctgctcttaaaatt
tgggttggatcactccatgatgatgattcgtctgcagctttgggggctttgttggtgcag
gtttctccaagagaaataatctatgaaacctcaggcctctcaaaagaaactcataaagcg
atcagaaaatatgcctcagcaggatctgtgaagatgcagctgacccccctacctgggata
gatttctctgatgtttcacaaattcgaatgttaatacattcgaaagagtactttacagca
tcagcagagtcgtggttatctgctttggattgtgcattgaatcgagatgcaattatttgt
gcacttggtggacttattggtcatttgactaggctcatgttacatgatgccctgaaaaat
ggggaagtcttatcataccacgtgtacaaaacctgtctaaggatggatggtcaaactctt
gtgaaccttgagattttcagcaacaattttgatggcggttcatcaggtactttatataag
caccttaatcaatgtgtcacagcatctggtaagaggctgctaagaaggtggatttgtcat
ccgcttaaggacattgatgctatcaataaaaggctcgatgttgttgaggccttcatccaa
aactgtggactgggccctacaacacttggatatctccgcaaaattcctgatcttgagaga
ttgttaggacaagttaaatctactgttggattatcatcttcaattcaattgccgtttgtt
ggagaaaggatattaaagaaacggatcagaacatttataatgcttatcaacggcctccgg
aatggacttgatttactaaatgacttacaaagagctgatcatggtgtatcagcactttat
aaggttgtagagattccaacattgagctcccttcatgaattgatccatcaatttgagaag
agagtacaagaggaatttccatgttaccaggatcttggtgtcgaagatagtgatggcgac
actttggctcttctagtgggactttttgttagaaaggcttctgaatggtctttagtgatc
aatgctgtgagcactattgatgtgcttaggtcctttgctgcaatgacattgtcatcattc
ggcaccatgtgcaaaccacacattctactgaaagatgatgtgcctatacttcggatgaag
ggtctatggcatccctatgcttttgcagaaagtgcaaacgggttggtaccaaatgattta
acccttggtcaggatttatctggcttcaatcgttttgcgttgttgttgactggtccaaat
atgggtgggaaatctacaatgatgcgtgccacctgcctgactattgtgcttgcccagctt
ggctgttatgtcccctgcacatcctgtgaattgacccttgcagattccatctttacacgt
cttggtgcaacagatcggattatgtctggagagagcacatttcttgttgaatgtacagag
actgcttctgttcttcagaatgcaactgaggattctcttgtattgcttgatgagcttggc
agaggaactagcacatttgatggatatgcaattgcgtatgctgtgttccggcacctcgtg
gagcaggtgcgatgccgtctgctcttcgccactcactaccactctctgacaaaggagttc
gcctcccaccctcacgtgagcctccagcacatggcctgcatgttcagagcaaggagcggc
gcccatgatgtcaatggcgagaaggagctcaccttcctctaccgtcttgcctcaggggcc
tgtccagagagctacggcctacaggtcgccacaatggcagggattccgaagtcgatagtg
gacaaggcatccgtcgcaggccaggcgatgaggttgaagattgccggtaacttcaagtcc
agcgaagagcgggccgcgttctcaacccaacatgaagagtggctgaggacggccatgtcg
gtcatcgtgaaggacgggcacctagatgaggacatcatggacacgttgttctgcgtctgc
caagagctgaagtttcacttcaggaaagcgagacgagcgtccaccgccactgaccactaa
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