Setaria viridis (green foxtail): 117858111
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Entry
117858111 CDS
T07951
Name
(RefSeq) AMSH-like ubiquitin thioesterase 3 isoform X1
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117858111
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
svs01002
]
117858111
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
svs04131
]
117858111
04121 Ubiquitin system [BR:
svs04121
]
117858111
Enzymes [BR:
svs01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
117858111
Peptidases and inhibitors [BR:
svs01002
]
Metallo peptidases
Family M67
117858111
Membrane trafficking [BR:
svs04131
]
Endosome - Lysosome transport
Others
Others
117858111
Ubiquitin system [BR:
svs04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
117858111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
117858111
NCBI-ProteinID:
XP_034597002
LinkDB
All DBs
Position
5:complement(19506951..19514193)
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AA seq
529 aa
AA seq
DB search
MATGPPRRARGDVSIESLARPVAVDHRISIQYYFRIADNLLRQADVYREENNLLDLYIIL
LRYSSLLLETIPKHHDYNAFKAREKEFLKKGPHNSQKLRSVLNELESLKPVVQQQFSNRN
CGGAEEPNGVNGTYAASSGMEQYIPSPYMPKVHKSLDGIFHRLHQSLAGGPTGLLQKSFS
SSKHQTTSLQNVQPERQLIKPYSTLPYPKEETLSRHSILGPNGLHGQWAGPVTGIRIEYP
RNPELTQTDISSLVPSILNQDSLHGPITVSQDKNDDMLSVLSLDDGRWSLPVEEPASVSP
GLEAEFSQLNIRQPSPFPVLAQVHSERGPIPPSRVADPRPGLAISDTGCYQNLHVPVALM
ECFLRVAEANTTKNLETCGILAGSLKKRTFYVTTLIIPKQKSTSDSCQATNEEEIFEVQD
KGSLLSLGWIHTHPTQTCFLSSIDLHNHYAYQIMLPEAIAIVMAPTDTTRKHGIFHLTDP
CGLGVIHDCDATGFHPHEEPQDGTPIYEHCSHVYMNPNVKFEMVDLREV
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgggacctcctcgccgggctaggggagacgtaagtatcgagtccctggcgcgg
ccggtagctgtcgaccaccgcatcagcatccagtactacttccgcatcgctgacaacctc
ctccgccaggctgatgtgtatcgggaggagaataaccttctggacctgtacatcatcctc
ctaagatattcgagcttgttgcttgaaacgatacccaagcatcacgattacaatgcattt
aaggcgagagaaaaggaattcctgaagaaaggtccccacaactctcagaaacttcgtagt
gttctcaatgagctagaatccctcaagccagttgttcagcaacaattttccaaccgtaat
tgcgggggtgcagaggaacctaacggtgtaaatggaacctatgctgcaagtagtgggatg
gagcagtatatcccaagcccatatatgccaaaggtacacaagtcattggatggcattttc
catcgtttgcatcagtcattggctggaggccctactggactactgcagaaatcgttctct
agttcaaagcatcaaacaacatcattgcagaatgttcaacctgagaggcaactaatcaaa
ccatattccactttgccttatccaaaagaggaaacactatcaagacactcgatactagga
ccaaatgggcttcatggccaatgggcaggccctgttactggtatcaggattgagtatcca
cgtaatcctgaattaacccaaactgatatctcaagtttagtgccatcaatcttaaaccag
gacagcttgcacggtcccattacagtatcgcaggacaaaaatgatgatatgctgtctgtt
ctctcacttgatgatggcagatggtctttaccagtagaagaaccagcctcagtgtctcct
ggtttggaagcagagttttcccagctgaatattagacaaccttctccctttcctgtccta
gctcaggtgcattctgaacgtggaccaattcctccatcaagagttgctgatccaagacca
ggacttgctatctctgacaccggatgctatcagaatttgcatgtgccagtggcattaatg
gagtgcttcctaagggttgctgaggcaaataccacaaaaaatttggaaacctgtgggatt
ctcgctggttccctgaaaaaacgaactttttatgtgacgacactgataattcctaagcag
aaatcaacatcagattcatgtcaggctacaaatgaagaagaaatttttgaagttcaggat
aagggctcacttttatctcttggttggattcatacccatccaacacagacctgcttccta
tcttccattgatcttcataatcattatgcgtatcagatcatgctacctgaagcaattgcc
attgttatggcaccaactgacacaacaagaaagcacggcatatttcatctcacggatcca
tgtggcttgggtgtaatccatgattgtgatgctactggattccatcctcatgaggagccc
caagatggtacgccaatctacgaacattgctcccatgtgtacatgaacccgaatgttaag
tttgagatggtcgacctccgtgaagtgtga
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