Setaria viridis (green foxtail): 117858154
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Entry
117858154 CDS
T07951
Name
(RefSeq) nuclear pore complex protein NUP85
KO
K14304
nuclear pore complex protein Nup85
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117858154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117858154
03036 Chromosome and associated proteins [BR:
svs03036
]
117858154
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117858154
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117858154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleopor_Nup85
DUF5696
Motif
Other DBs
NCBI-GeneID:
117858154
NCBI-ProteinID:
XP_034597057
LinkDB
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Position
5:36012541..36020070
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AA seq
728 aa
AA seq
DB search
MPGMPTDGGGAIVPFRGEPGQGAPSPPPLRPIRHGVAPPIFRVYINWSSGNLLQFACLRP
PNSEGCGGVEVAGSVVEVNLGSGGNGGAEVEEEIDEAEMRRIEYGSVPAFALLQSRKNAL
ADAAAMSRMSSVPDYAEWWQYVLEYSKTISNLLGNPDSPPAFMIEDPKTILKVREKPTSL
RAAWELLEIFYVDKQLQSWLPERLVDWLADFDSLLSATESTVYSKLSNFQKKLINLQIVE
DDPDYWNGLSAALSVGWLDIVVNMLRFHGSYQLDQMDNRETENGLVEAVAVLVSTMPRLR
PNLPTGKLGQCCKTRPDFVKAWEKWRGQVTKLECSAFWIQCGHQKTRDGLKNLLHIMMGN
IKELTASTSHWLELFASHFLYIRPFTVGFEGMHHLAQKCIQLKPSSSTTGLTGLVIGVLS
ENPEVVLAECTKHFGPWLVTHAMELLTADNDYADTMLHEERPNLGGISIEELHRLVYAQV
LCSHSLTWQIAPTYLSSCLNQGLGLLEILLLKQPIQDNRLVLKTLEICRLYELDNISTNI
MKVAGIYHWKHGRKGVGVYWFQQAHDKVRLDRIAQQLFEHIGKSVADDSFKQWEGLLELL
GSDIGSAGGLEFLHRYRDFKRSLHQALDGRSGEAARQTVDFLIQLMRNPSTPQRFWLPLL
HDSMELLNCKPSPLMNVAETNLLLNKLQELSLAKLRPDFSNNHLPSHALSSVRLALASNL
ARAILEDP
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcatgccgacggatggcggcggcgctatcgtcccatttagaggggagcctggc
caaggggcgccgtcgccgccacccctgcggccaatccgccacggcgtggccccacccatc
ttccgcgtctacatcaactggtccagcggcaaccttctgcagttcgcgtgcctccgcccg
cctaactcggagggctgcggcggcgtggaggtcgctgggagtgtggtggaggtgaacctc
ggctccggcggcaatggtggcgccgaggtcgaggaggaaattgacgaggcagagatgcgc
cggatagagtacgggtcggtgccggccttcgcgctgctgcagagcaggaagaacgccctc
gcagatgctgccgctatgtcgcgcatgtcctcagtccctgattacgcagaatggtggcaa
tatgtgctcgaatacagcaaaaccatcagcaatctccttgggaacccggattctccacct
gctttcatgatcgaggaccccaagacaattcttaaggttagggagaagcccacaagtttg
agggctgcctgggagttgttggagatattctatgttgataaacagttgcaaagctggctt
cctgagcgtcttgttgattggttagccgattttgacagcctcttgtcagcgacagagagc
acggtgtattctaaactcagcaatttccagaaaaagctcatcaatttgcagattgttgaa
gatgatcctgattactggaatggtttgtcagcagcactttcggttggatggcttgacatc
gtggtgaatatgctacggtttcatggatcataccaattggatcagatggataaccgtgag
acagaaaatggattagtcgaggctgttgctgttcttgtatcaacgatgccacgcttgaga
ccaaatttaccaactggtaaattaggccagtgctgcaaaacaagaccggattttgtcaag
gcatgggaaaagtggcgaggtcaagtgactaaactggagtgcagtgcattttggatccag
tgtggtcaccaaaaaacccgtgatggtttgaagaatttgcttcatattatgatggggaac
ataaaggaactcactgcttctacctcccattggctggagctgtttgcttctcattttctt
tacataagaccatttacagtgggctttgaagggatgcaccatttagcacaaaagtgcata
cagcttaagccgtcctctagcactactggattaacaggcctcgttattggcgtcctttca
gaaaatccagaggttgtgctggcagaatgcactaaacattttggtccttggttggtcaca
catgctatggaactgctgacagctgataatgactatgcggatactatgttgcatgaagag
cggcctaacttaggcggtataagcatagaggaactgcaccggctagtctatgctcaagtt
ttgtgctctcattctttaacttggcagattgcgccgacttatctgtcttcatgtctaaac
caaggcctagggctcttggagattctacttctcaagcaacccatacaagataatcgccta
gtactcaagactttggaaatctgccgtttgtatgaactggacaatattagtacaaacata
atgaaggttgctggcatttatcattggaaacatgggcgaaaaggagttggtgtatactgg
ttccagcaagctcatgataaagttcgtcttgacagaattgctcaacagttatttgaacac
attgggaagtcagtcgcagatgatagttttaagcaatgggaagggctgctcgagctactt
ggttctgatattggtagtgcgggtggcctcgagttccttcacaggtaccgtgatttcaag
aggtctctgcaccaagccttagatggaaggtccggtgaggctgctcggcaaactgtagat
tttcttatacagcttatgaggaacccatccaccccgcaacgtttttggctaccccttcta
cacgattcaatggagctacttaattgcaaacccagccctctaatgaatgttgctgagacg
aacttgttgctcaacaagctgcaagagctgtcactcgccaagctgcgccctgatttttcg
aacaatcacctaccaagccatgcgttgagctccgtgagattggctctggcatcgaatttg
gcacgtgccattcttgaagacccttga
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