Setaria viridis (green foxtail): 117858349
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Entry
117858349 CDS
T07951
Name
(RefSeq) uncharacterized protein
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117858349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117858349
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117858349
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
117858349
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_ZnF
Sina_RING
zf-TRAF
Motif
Other DBs
NCBI-GeneID:
117858349
NCBI-ProteinID:
XP_034597296
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All DBs
Position
5:6516301..6517883
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AA seq
334 aa
AA seq
DB search
MSEQQKRVSTPENGHGGKRPRALASPDGGVKQERRGQAEASQGGEGEGAVVAVQAMDDPQ
ISVRISVARLHCNACLVPLKPPTFKCEAGHVVCSTCRGRHGQGCAGAGAYAACVELDDIV
RDAKVPCAYEEYGCTSWVVYHKVVDHHRTCRWGPCFCPDSSCELYASPARLAEHFAAHHA
WPVAKIAYGKPCKLAVPGPQGRQVLVGEGDGCVFLVSPCALGAATAVSLVCVRAGGDAVA
GAPQFRCKLWVEVEGNKENLALVTSMVASSNLSGGFVAAEQGMFLAVPPELLHDESGEAP
ALMVRIDRAGAAAAAASARSPSATPPSKLPKRLQ
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcagcagaagagggtttccacgccggagaacggccacggcggcaagaggccg
agggcgctggcctcaccggacggcggggtcaagcaggagcggcgagggcaagcggaggcg
agccagggcggcgagggagagggagccgtggtggccgtgcaggccatggacgatccgcag
atcagcgtcaggatctccgtcgcccgtctccactgcaacgcctgcctcgtccctctcaag
ccccccaccttcaagtgcgaggcagggcacgtcgtgtgctccacctgccgtggcagacac
ggccagggctgcgccggcgccggcgcctacgccgcctgcgtcgagctggacgacatcgtg
cgcgacgccaaggtgccctgcgcctacgaggagtacgggtgcacgagctgggtcgtctac
cacaaggtggtggaccatcaccgcacctgccgctgggggccctgcttctgcccggactcc
agctgcgagctctacgcctcgccggcgaggctggccgagcacttcgccgcccaccacgcc
tggcccgtcgccaagatcgcctacgggaagccgtgcaagctcgccgtcccggggccccag
ggcaggcaggtcctcgtcggcgagggcgacgggtgcgtgttcctggtgtccccgtgcgcg
ctcggcgcggccacggccgtgtcgctggtgtgcgtgagggcgggcggcgacgcggtggcg
ggggcgccccagttccgctgcaagctctgggtggaggtcgagggcaacaaggagaacctg
gcgctggtcacgtccatggtggccagcagcaacctgtccggcgggttcgtggcggcggag
cagggcatgttcctggcggtgccgccggagctgcttcacgacgagtccggcgaggcgccc
gccctcatggtccgcatcgacagggccggcgcagccgctgccgctgccagtgccaggtcc
ccgtccgccacgccgccgtcgaagctccccaagaggctgcagtaa
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