KEGG   Setaria viridis (green foxtail): 117858606
Entry
117858606         CDS       T07951                                 
Name
(RefSeq) probable histone deacetylase 19 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03082  ATP-dependent chromatin remodeling
svs03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    117858606
   03083 Polycomb repressive complex
    117858606
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:svs03036]
    117858606
Enzymes [BR:svs01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     117858606
Chromosome and associated proteins [BR:svs03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     117858606
   HDAC complexes
    Sin3A-HDAC complex
     117858606
    BRAF-HDAC complex
     117858606
    REST complex
     117858606
    SHIP complex
     117858606
    MiDAC complex
     117858606
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     117858606
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    117858606
  Chromatin remodeling factors
   NuRD complex
    117858606
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 117858606
NCBI-ProteinID: XP_034597603
LinkDB
Position
1:complement(3559759..3563959)
AA seq 518 aa
MDLSSAGSGGNSLPSVGPDGQKRRVCYFYDPEVGNYYYGQGHPMKPHRIRMTHSLLARYG
LLNQMQVYRPNPARDRDLCRFHADDYINFLRSVTPETQQDQIRLLKRFNVGEDCPVFDGL
YSFCQTYAGASVGGAVKLNHGHDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKHH
ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVP
LDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKY
MRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGQELEDKMPVNEYYEYFGPDYTLHVAP
SNMENKNTRHQLDDIRSKLLDNLSKLRHAPSVQFQERPPDTELPEPDEDQVDPDERHDPD
SDMEVDDHKAVEESTRRSNILGIRVKREFGESDTKVQDGGRVTSEHRGLEPMAEDIGSSK
QAPQADANAMAIDEPGNVKNEPESSTKLPDQPAMYHKP
NT seq 1557 nt   +upstreamnt  +downstreamnt
atggacctctcgtcggcgggctccggcggcaactcgctgccgtcggtcggccccgacggg
cagaagcggcgcgtgtgctacttctacgacccggaggttggcaactactactacgggcag
gggcacccgatgaagccgcaccgcatccggatgacgcactcgctgctcgcccgctacggc
ctcctcaaccagatgcaggtctaccgccccaaccccgcccgcgaccgcgacctctgccgc
ttccacgccgacgactacatcaacttcctccgctccgtcacgcccgagacgcagcaggac
cagatccgcctcctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctc
tacagcttctgccagacctacgccggcgcctccgtcggaggggcagtcaagctcaaccac
ggccacgacatcgcaatcaactggtcggggggcctgcaccacgcgaagaagtgcgaggcg
tcgggcttctgctacgtcaacgacatcgtgctcgccatactcgagctcctcaagcaccac
gagagagttctgtatgtcgatatcgatatccaccatggagacggagtcgaggaggctttc
tacacaacagacagggtcatgaccgtctcgttccacaagtttggggattatttccctgga
acaggggatatccgtgacatcggccactcaaaggggaagtactactctctgaatgtccct
ctggatgatgggattgatgatgaaagctatcagtccctgttcaagccgatcatgggcaag
gttatggaggttttccgccctggtgcagttgtgcttcagtgtggtgctgattccttgtct
ggagataggctaggctgcttcaatctctctatcaaaggtcatgcagaatgtgtcaaatac
atgaggtctttcaacgttccattgctgcttctcggtggtggtggatataccatcagaaat
gttgcacggtgctggtgttacgagacgggagttgctcttggtcaggagcttgaagacaag
atgcctgtcaacgagtactatgaatacttcggtccagattacactcttcatgttgcacca
agtaacatggagaacaaaaatacacgacaccaactggatgatattagaagcaaacttctg
gataatctttcaaaacttcggcatgctcctagtgtccagtttcaagagcggcctcctgac
acagagttgcctgagccagatgaagatcaagtggatccagatgaaaggcacgatcctgat
tctgatatggaagtggatgaccacaaggctgtggaagagtcaacaaggaggagcaacatt
ctagggataagagttaagagagaatttggtgaaagtgacaccaaagttcaggatggtggc
agagttacatctgaacatagaggactggaacccatggcagaagacattggttcctccaag
caagctcctcaggcagatgccaatgcgatggccatcgatgagccaggcaacgtcaagaat
gaaccagagagctcaactaagttaccagaccaaccagccatgtaccataagccatga

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