Setaria viridis (green foxtail): 117858872
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Entry
117858872 CDS
T07951
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1 isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04120
Ubiquitin mediated proteolysis
svs04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117858872
04120 Ubiquitin mediated proteolysis
117858872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117858872
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117858872
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117858872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_11
zf-RING_16
zf-RING_5
zf-HC5HC2H
FlxA
Motif
Other DBs
NCBI-GeneID:
117858872
NCBI-ProteinID:
XP_034597911
LinkDB
All DBs
Position
1:complement(28532630..28538722)
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AA seq
505 aa
AA seq
DB search
MIRLQTYTAFSLLAMASAVYYAFSSQEQFYPAMVYLSTSKICFVLLLNTGLVAMCVTWQL
VKRLFLGSLREAEVERLNEQSWREVVEILFAVTIFRQDFSVSLLAMVAALLLVKALHWLA
QKRVEYIETTPSMPMLSHIRIVSFMAFLLIVDCLFLSNSLRPLIEKREASVAIFSFEYMI
LATSTVSTFVKYIFYVTDMLMEGQWERKAVYTFYLELISDLVQLSLYMLFFVAIFLNYGV
PLHLIRELYETFRNFRIRIADYLRYRKITSNMNERFPDSTAEELNANDATCIICREEMTT
AKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDNGRAASSRQYGAQPGVQPAAAGTG
TPASEGAASENMSRRQAKLEAAAAAASLYGRSFAYPPANTLNRSVPPQSASSIPQSEASC
SNQSQKDQELQFQNTNDGLAPQAFNAHGAISSGTSTRDLESSLQKAQENFIKSQIEMLQI
QLQMVQRGAAVSATNNENAEHRKNG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtcttcagacgtacacagcgttcagcctgctggcgatggcatcggcggtgtac
tatgccttcagtagccaggagcagttctacccggcgatggtctacctctccacctccaag
atctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgtcacctggcaactc
gtcaagcgcctcttccttggatcgctccgggaggccgaggttgagcgtctcaatgagcag
tcctggcgggaggtcgttgagatcctctttgccgtcaccatcttccgccaggacttctca
gtctccttgcttgccatggtcgctgcgctgctccttgtcaaagcactgcactggctggcc
cagaagagggtcgaatacatcgagaccacaccgtccatgcccatgctctcgcacataagg
atcgtttccttcatggcgtttctgctcatcgtcgactgcctcttcctgtccaactcgctc
aggccgctcatagagaaacgggaggcatcagttgccatcttctcctttgagtatatgata
ctggcaacatccacagtatcaacatttgtgaagtatatattctatgtcactgatatgcta
atggaaggtcaatgggagagaaaggcagtgtatacattttacttggagctcatcagtgac
cttgtgcaattgtcattatacatgctcttcttcgtagctatcttcctgaactacggtgtc
ccgctgcacttgatccgtgagctatatgagaccttccgcaacttcagaattcgcattgca
gattatctacgctacagaaagatcacgtccaacatgaatgaacgctttccagattctaca
gcagaagagctcaatgcgaatgacgctacatgtattatttgccgtgaggagatgactaca
gcaaagaagctgctttgtgggcatctattccatgtccattgtctaaggtcatggctagag
cgccagcacacttgccctacgtgcagagctccaatcattcccccagataatggacgtgct
gcatcatcgcgacaatatggagctcaacctggagtccagcctgcagctgcaggtactggc
actccagcctcagaaggagcagcaagtgagaacatgagcaggcgccaagcaaagcttgaa
gcggcagcagcagcagcttctttatatggaagatcttttgcttatcctccagcaaacacc
ctaaataggtcagttcctccccagtctgcatctagtataccacaatctgaagcaagttgc
tccaatcaatcccagaaagaccaagaactgcagttccaaaacaccaacgatggtttagcg
cctcaggcttttaatgcacatggtgctattagttcaggaacaagcaccagggatcttgaa
agttcactgcagaaggcacaagaaaactttataaagagccagatagagatgttacaaatc
caactgcaaatggttcagcgcggtgctgctgtatcagccactaacaatgagaatgcggag
cacagaaagaatggctga
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