Setaria viridis (green foxtail): 117858997
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Entry
117858997 CDS
T07951
Name
(RefSeq) F-box protein SKP2A
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117858997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117858997
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117858997
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GFIT
Motif
Pfam:
LRR_6
LRR_At5g56370
LRR_4
F-box-like
LRR_14
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
117858997
NCBI-ProteinID:
XP_034598059
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Position
5:complement(42351605..42355495)
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AA seq
379 aa
AA seq
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MDSTKPLGGELNNSLDTLMVSSGVESKQAQNAGTETSLTGWKDLPMELLLRIMSLVGDDS
MVIVASGVCTEWRDALGWGIANLSLSWCQDHMNDLVISLAHKFTKLQVLSLRQIKPQLED
SGVEAVANYCHDLRELDLSRSFRLSDRSLYALAHGCPHLTRLNISGCSNFSDAALVFLSS
QCKDLKCLNLCGCVRAASDRALQAIACNCGQLQSLNLGWCDGITDKGVTSLASGCPELRA
LDLCGCVLITDESVVALANGCPHLRSLGLYYCQNITDRAMYSLAANSRVRSQGRGWDAAK
RGSGKDRDRDGLASLNISQCTALTPPAVQAVCDSFPALHTCPERHSLNISGCLSLTSVHC
ACALHPHRAGRAILSNHAY
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggatagcacgaagccactgggaggggaattgaacaattcgctcgatactcttatggtt
tctagtggtgtggagagtaagcaggctcagaatgctggcaccgaaaccagcttgacaggt
tggaaagaccttcccatggagctgctcctgcggattatgtcattagttggagatgacagc
atggtcatcgtggcctctggtgtatgcacggaatggcgtgatgcgttaggttggggaatt
gcaaatctttcactatcatggtgccaggaccacatgaatgacttggtgatatctctggct
cacaaattcacgaagcttcaagttctatctctacggcagatcaaacctcagctcgaagac
agtggtgtggaagctgtggcaaactactgccacgatctgcgggaactggatctcagcaga
agctttaggcttagtgaccggtccttgtatgctctggcacatgggtgccctcacctcaca
aggctcaacatcagcgggtgctccaatttcagtgacgctgctttagtgttcctcagtagc
cagtgcaaggatctcaaatgcctgaatctgtgcgggtgtgtgagggcagcttctgacaga
gcgcttcaggccatcgcttgtaactgtggccagctgcaatccttgaacctgggctggtgc
gatggcatcactgacaagggagtgaccagcttggcgtcagggtgccctgaactccgggct
ttggacttgtgtggctgtgttctcatcacagatgagagcgtagtggcgctagcgaacggc
tgccctcacctgcgttccctggggctgtactactgccagaacatcacggaccgcgccatg
tactcgctggccgccaacagccgcgtgaggagccagggccggggctgggacgcggcgaag
aggggcagcggcaaggaccgggaccgggacgggctagcgagcctgaacatcagccagtgc
acggcgctgaccccgccggcggtgcaggccgtgtgcgactcgttcccggcgctgcacacg
tgcccggagcggcactcgctcaacatcagcgggtgcctcagcctcacctccgtgcactgc
gcctgcgccctccacccgcaccgcgccggccgtgccatcctctccaaccacgcctactga
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