Setaria viridis (green foxtail): 117859574
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Entry
117859574 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117859574
Spliceosome [BR:
svs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
117859574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
117859574
NCBI-ProteinID:
XP_034598592
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All DBs
Position
6:23734426..23748696
Genome browser
AA seq
1203 aa
AA seq
DB search
MEPEPEAAAAAGALASEAAAPEHHPSQLDVFKNRIRLLRNRTGNFDAWVSLISVAEGTSA
DDIEVISLVYGSFLLEFPLCYGYWIKYAAHKARLCMNRDVVDVYEQAVQAVPHSVDLWVS
YCGFGVCAYEEPADIRSLFERALSLVEKDYLCYHLWDKYIEFESSQKQLIQLAIIYINTL
KFPTKKLHMYYESFRKLVTLLEQEVTSCAAGRLSDKIHTSEMIEAEDSELDISTIIADLF
DQKGGHFSPEALKNYLAAGERLYKRSSKIDKEICCFEASVKRPFFHVKPLDIDQLENWHQ
YLDYVEKNGDFDWAVKLYERCLIPCANYSEFWIRYSEYVDAKGGREIANHALVRASSCFV
KGVPTFCMYYALFKEQIGDASAARSLFVKASSNFTSGFYANINRLANMEKRMGNSKAASK
IYETAIEDAMQKQNIELLQDLYSNFAQFIYAASHSIVEAKEVFVKGINRVPCKPLIKGLI
QFMSTHGGPTEIPLLDSVISNAVTPGSDVSTALSPEDREDISLLFLEFVDLYGGVEELRK
AWARHSKLFPHSTGNMSQHYPTIGNSIQENNKRRKTEHSIVAHDHSLEDIRKLKQTTKTD
NFSLIFDKEVESQVERDIVDSGKGHRDAGEQKALENLDSHEETSRASQECTHSLDKYGMQ
NQMNSFAKEETDQDLSLHEQNAEKTSHEAQSHEAPVAESGDCNSPSKAIASSESINSQDK
VAVVSARIHREMVCSKSDLPSGSSMPKEGGSSSDPARISPELEERHHVEVQVKLDTEDGL
SVSNANLERSNDSPNTTDCDKVNSALVHESQNHVQSSPAEQLAVCAKPSSSELVNTKADT
LGFQAQLQNQVANSQTHQSNNLSLPVQNIQQQGPSYTMAQNVQTSAQTQDQLFAQSNQGN
QQYLQMTQGYASQMWQYYQQQLYYLQAQHNQQMQSLQQQHLPTEHLQQNFMQQVQQLQQQ
MVLWQQQVQQQQQQVVLQQTIPAQQLPDRKQGQHPSSSGDTKHDQNKQQQQAPQMDQQSQ
QLQQQQLLYFQQQQQQQMYLMQQQQQVYQQQQAQQQQQQLFQQQLMQQQQFVLQMPQLQQ
DSVQQQQQQQLFQQQQQQMMLLQQQFMQQQMQQYLQQQQNQQGPKDQTYNSNPQVLTLYQ
ILMKHDRMEGPSKWSMGNSLKHHRVMVPNCGVVNNLSYPTRQLHSHAQIAESFRITCLLI
KRQ
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atggagccggaaccggaggccgcggccgcagccggggccctcgcgtcggaagccgcggcg
cctgagcaccacccgtcgcagctcgatgttttcaagaacagaattcgactattacgtaat
aggacgggcaattttgatgcttgggtatcattaatcagtgttgcagagggaacatcagca
gatgacatagaagttataagcttggtatatggtagcttcttattggaatttcctttgtgc
tatggctactggatcaagtatgcagctcacaaggcacgactatgcatgaacagagatgta
gtggatgtttatgaacaagctgtccaagctgtgcctcattctgttgatctttgggtcagt
tactgtggctttggtgtatgtgcatatgaagaacctgctgatatcagaagtttatttgaa
agagctttatctcttgtcgaaaaggactatttgtgctatcacctgtgggacaagtatata
gaatttgaaagttctcagaagcagctgattcagcttgccatcatttatatcaacacactg
aaatttccaacaaagaagctgcacatgtattatgaaagttttagaaagttggtaacatta
ttggaacaagaggtgacaagttgtgctgctggaagattatcagacaagatacatacttcg
gaaatgatagaagctgaagattctgaattggatatatcaactattattgctgacttattt
gaccaaaaaggtgggcattttagtcctgaagcattgaagaattacttagctgctggggag
aggctctacaaaaggtccagtaaaattgacaaagaaatctgttgctttgaggcatccgta
aaaaggcccttttttcatgtcaagccacttgatattgatcagcttgaaaactggcaccag
taccttgactatgttgagaagaatggggattttgactgggctgtaaagctctatgaaagg
tgtttgatcccttgtgctaattattcagagttttggattcgctactcggagtatgtcgat
gctaaaggtggccgagaaattgcaaaccatgctcttgttcgagcatcatcatgttttgtg
aagggagttccaactttctgcatgtattacgcgttgtttaaagagcaaattggtgatgca
tcagctgcacgctctctttttgttaaagcaagcagtaacttcacttcgggtttttatgct
aatatcaataggctggccaacatggaaaaacgcatgggaaacagtaaagcagcttctaag
atatacgagacagccattgaggatgcaatgcagaagcagaacatagagttacttcaggac
ctgtacagcaattttgctcaattcatatatgcggcaagtcatagcattgtggaggctaaa
gaagtctttgtcaagggaatcaatcgtgtaccctgtaaaccactgattaagggactcata
cagttcatgagcacacatggaggacctacagaaatacctcttcttgattctgttatttct
aatgccgtgactcctggatctgatgtatcaacagctttaagccctgaggaccgtgaagat
atctcattgttgtttttggagtttgttgacctttatggaggtgtcgaagaactcagaaag
gcatgggctcggcatagtaaattgtttcctcacagcactgggaacatgtcacagcattat
cctactataggaaatagcattcaagagaataacaagaggagaaaaacagaacattcgatt
gttgctcatgatcattctttagaagatataaggaaattgaaacagacaaccaaaactgac
aatttttctcttatatttgataaagaggttgagtcacaagtggaaagggacattgtggat
tcaggaaaaggacatagagatgcaggagagcagaaagctttagagaatcttgattcacat
gaagagaccagcagggcatctcaggaatgcactcatagcctggacaaatatggaatgcag
aaccaaatgaattcatttgctaaagaagagactgatcaagatctgagtttgcatgaacaa
aatgctgagaaaacatctcatgaggctcaaagccacgaagcccctgtagctgagtcaggc
gactgtaattctccttccaaagcaattgctagctctgaaagcatcaattctcaggacaag
gtcgctgtggtatctgcaagaatccatcgtgaaatggtatgctccaaatctgatttgcca
tctggatcaagcatgcccaaagaaggtggaagttcttctgatccagctcgaatatctcca
gagctggaggaaaggcatcatgtggaggttcaggtaaagcttgacacagaggatggtttg
tctgtcagtaatgcaaacctagagaggtctaatgatagcccaaacacaactgactgtgac
aaggtaaactctgctcttgttcatgagagtcaaaatcatgtccaatcttcaccggcagaa
caactcgcagtctgtgcaaaaccttcgagctcagaattagtgaacacaaaagcggatact
ctgggttttcaagctcaactgcaaaaccaggtggcgaattctcaaacgcatcaatctaat
aacctttctctgcctgtacaaaacatacaacagcaagggccttcttatacaatggctcag
aatgttcaaacatctgcacaaactcaagatcaactctttgcacagtccaatcagggaaat
cagcagtatctccaaatgacgcaagggtatgcatcacaaatgtggcagtattatcagcaa
caactgtattacctgcaggctcagcacaatcaacagatgcagagtctgcaacaacaacac
cttccaactgagcatcttcagcaaaatttcatgcagcaagtgcaacagttgcagcagcaa
atggtactttggcagcaacaagtgcagcagcagcagcagcaagtagtactgcaacagaca
attccagctcagcaactccctgacagaaaacagggtcagcatccttcttcttcaggggat
accaaacatgaccaaaataaacagcagcaacaagcacctcaaatggatcagcaaagccaa
cagttgcagcagcaacagcttctttatttccagcagcagcagcagcaacaaatgtatctt
atgcagcagcagcagcaggtgtaccaacaacagcaagcccagcagcagcagcagcagctc
tttcagcagcagttaatgcagcaacaacagtttgttctgcagatgccacagctacagcaa
gactcggttcagcagcagcagcagcagcaactgtttcagcaacagcagcagcagatgatg
cttcttcagcaacagtttatgcaacaacagatgcaacagtacctgcaacagcaacaaaac
caacaaggacccaaggaccagacatacaactcaaaccctcaggtacttaccttgtaccaa
attctgatgaaacatgataggatggaaggaccaagcaaatggagcatgggcaacagtctg
aagcatcacagagtgatggttccaaactgcggagtggtgaacaatctgagttatcctacc
cgtcaactccacagtcacgctcaaatcgctgaatcatttaggataacctgtcttctaatc
aaaagacaatga
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integrated database retrieval system
