Setaria viridis (green foxtail): 117860452 Help Entry 117860452         CDS       T07951                                  Name (RefSeq) uncharacterized protein   KO K10643   CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] Organism svs  Setaria viridis (green foxtail) Pathway svs03018   RNA degradation Brite KEGG Orthology (KO) [BR:svs00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     117860452  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:svs03000]     117860452    03019 Messenger RNA biogenesis [BR:svs03019]     117860452    04121 Ubiquitin system [BR:svs04121]     117860452 Enzymes [BR:svs01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      117860452 Transcription factors [BR:svs03000]  Eukaryotic type   Zinc finger    Cys3His zinc factors     117860452 Messenger RNA biogenesis [BR:svs03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      117860452   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      117860452 Ubiquitin system [BR:svs04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     117860452 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  zf-RING_4 RRM_1 Baculo_IE-1 Nup35_RRM_2 Rtf2 PcfJ zf-UDP Motif Other DBs NCBI-GeneID:  117860452 NCBI-ProteinID:  XP_034599635 LinkDB All DBs Position 6:33853988..33862854 Genome browser AA seq 1174 aa AA seqDB search MDRHLQQQLGTNMSDDGDHTCPLCAEEMDITDQQLKPCKCGYDICVWCWHHIIDMAEKEE TEGRCPACRTRYDKDRIVKMTATCERTVAEKNAEKKHKTQKVKPKVALAAAASTTTSTVE AKKHLIGVRVIQKNLVYITGLPAHLCNEIVLERREYFGQYGKVLKVSVSRPTGPPSQQAS ANNNISVYITYAKEEEAIRCIQTVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLY LHEVGGQEDSFTKDEIISAYTRTRVPQMASSVSQRRAGTVLPPPADDFSYSAVVSAKHTV KNGTLNTTNQPRLSPPNSSSGRSTLPPAASWGHRDLNARTTANGVTPSQSHTKSKSEPQI NSFSSSSMISSTIMPSSWNDDTNTSTAPKISEGRQVSQQDSTSKTIEPYKPGIVKETHAL SSLDIDFSTIPSAWNDDDIVVSDGMSKGSKEIQAAKENGKLTHLASKSPISPKKDTTVNI TSKSPSDLVSSLAISKSDVKTGDSDSSVSNITPKSPTSNDVNCQSSLAANEKILEDIEPP REIDTEKLSVQISSITLDGNDEAHSMAGNHQPDALPRTSVTVPIGQNFDRDRSYMKLDGL LSLENKDTLLSCQYGSDKHLDWTSEQPSCSATPLNDMVNSTAITDKLHGRLMDGSDQPSY SSFARFPNTVATSLWNDTESNPTLMIGTKPSEMQPGFSSINKTHALLSGCQDGLGTVCTP GNVSGHPGMGSHQPGAMGSVRTDSVGSFDKTASVNKDESRIISDMLSSEFNLWDDSFSSA NSFVRMLRESENNDVPFTLPSWKSGSGSRESRFSFARQDNQGNLDSSLRNCGSDQNFSLL PQISRGNFYQNGHAFQSLENDVHNSNSLAVSDMATTGSSRSKISAPPGFSAPARVPPPGF SSGFPSQDGLNPPPGFSSGISSQEVSKNPPRLPSPFSSGFSSQDGPNPSYRSFSAFASGL PSQDGPNPPSRFPSAFTSGFSSHDGSNQVYGSTYPETLLRDNVLGGNSNHYQAPFGRHTS DIEFNDPAILAVGKGRMPGIGDSGLEMKNTPAFPAQLQTPNNDPRFQLRMQPNVQSHQNL RFADHMQDAFNPMNDNYLASKFLQQNHGPVSPYAQMTQQPRNSQLTNGHLDGWSDLRQGN NALMSDMSRMLYPSEVNSLHMLGSNDIYTRAFGM NT seq 3525 nt NT seq  +upstreamnt  +downstreamnt atggatcgccacctgcagcaacaactcgggactaacatgagcgatgatggagaccatacc tgcccgctctgcgccgaggagatggacatcactgatcagcagctcaagccgtgcaaatgc ggatatgatatttgcgtctggtgctggcaccacatcatagacatggctgagaaggaggag acagagggccgctgccctgcatgccgcactcgctacgacaaggacaggattgtcaagatg actgccacttgtgagaggacggtggcagaaaaaaatgcagagaagaagcacaagacccaa aaggttaagccaaaggtggcattggcggcagcagcatcaacaacaacatctacagtagaa gctaagaagcatctgattggtgtcagggttatccagaaaaatctggtgtacataactggg ctacccgcacatttatgcaacgagattgtacttgagcgtagggaatactttggtcaatat gggaaagttttgaaggtttcggtttcccgtcctactgggcctccttcccagcaggcatca gcaaacaacaatattagtgtatatattacttatgccaaagaagaagaggccatccggtgt attcaaactgtacataattttgtcttggaaggaaaagttttaagagcatgctttggtact acgaagtattgccatgcatggctgcggaacatgacatgtgggaatccagattgtctctat ttgcatgaagtaggcggtcaggaggatagtttcactaaagatgagatcatttcagcatat acgaggactagggttccccagatggcatctagtgtttcacaaagacgtgcaggcactgta ttgcctcctccagctgatgatttctcttacagtgcagtggtatcggccaagcatacagtc aagaatggaacacttaataccaccaaccagcccagactttcacctccaaacagtagttct gggaggtccacgcttccaccagctgcctcatgggggcatcgtgatttgaatgcccggaca acagctaatggggtgactccatctcaatctcatacgaaatcaaaatcagagccacaaatt aattcattttcaagttcttcgatgatttcgagtacaataatgccttcttcatggaatgat gatacaaatacaagtacagcaccaaaaatttctgaagggcggcaagtgtcacaacaagat agtacatctaaaaccatagagccgtataagcctggtattgtgaaggaaacacatgctcta tcatcacttgacatagacttctccacaataccttcagcttggaatgacgatgacattgta gtgtcagatgggatgtcaaaaggaagcaaggaaattcaagctgcgaaagaaaatggaaag ctaacccatctagcatctaagtcaccaatatcacctaagaaagacacgacagtgaacatt accagcaaaagtccttcagatttggtatcaagtctagcaatatcgaaatcagatgtaaag actggcgatagtgatagctcagttagcaacattactcccaaaagccctacttcaaatgat gtaaactgccaatctagtcttgctgccaatgagaaaatactggaggatattgaacccccc agggagattgacactgagaagctatctgttcagatatcttcgataactttagatggcaat gatgaggctcatagtatggcaggaaatcatcaaccagatgcactgccacgcacgtctgtt accgtgccgataggccagaattttgacagagaccgatcttatatgaagcttgatgggctc ctatctttagaaaacaaggatacacttctctcctgtcaatatggttctgataagcatctt gattggacttcagagcagccaagttgtagtgcgactcctttaaatgatatggtaaattct acagcgatcactgacaaacttcatggtaggctgatggatggttcagatcaaccatcatat tcatcatttgcccgttttcctaatacagtagccacttcactgtggaatgatacagaaagt aaccctacattgatgattggtactaaaccttcagagatgcagcctgggttttcttcaatc aataagactcatgccttgttaagtggttgtcaagatgggctagggactgtatgtacacct ggtaatgtttctggacatcctggaatgggaagtcatcagcctggtgcaatgggttcagta agaactgatagtgtaggaagttttgacaagactgcaagtgtaaataaggatgagagcaga ataatttctgatatgttgtcatcagagtttaatctgtgggatgattcattttcatctgct aacagttttgttaggatgcttagagaatctgaaaataatgatgtccctttcaccctgcct tcatggaaatcaggatccggaagcagagagtccagattttcgtttgctaggcaggataac caaggaaacttggattcatctctcagaaactgtggtagtgatcagaatttcagtttgcta ccccagatctctcgaggaaatttttaccagaatggccatgcattccaatccctggagaat gatgttcacaatagcaactctcttgctgtgtcagatatggcaactactggttcatcaaga tctaaaatatccgcacccccaggattttcagcaccagcaagagtcccccctcctggattt tcttccggatttccttcccaggatggtctgaatccccctcccgggttttcttctggaatt tcatctcaggaagtgtccaagaacccaccgagattgccttccccattttcttctggattt tcatctcaggatgggcctaatccttcttatagatccttttctgcatttgcttctggactt ccatcacaggatgggcctaaccccccttctagattcccttctgcatttacctctggattt tcatcacatgatgggtctaatcaggtgtatggctcaacatacccagaaactcttctccgg gacaatgttttgggcggcaacagtaatcattatcaagctccgtttggcagacacacaagt gacatagaatttaatgatcctgctatattggccgtgggaaaagggcggatgcctggaatt ggtgattcaggtctggagatgaaaaatacccctgcttttccagcccagttgcaaacaccg aacaatgatccaaggtttcagttacggatgcagccaaatgtgcagtcgcatcagaacttg agattcgcagaccatatgcaagatgccttcaaccctatgaatgataattatctggcatcc aaatttttacagcagaatcacggtcctgtatccccttatgcacagatgacacaacaaccc agaaactcacagcttacaaatggtcacttggatgggtggagtgatttgagacaagggaat aacgcccttatgtcagacatgtcaaggatgttatatccaagtgaagtgaatagcttgcac atgcttggttctaatgatatctataccagagcctttggaatgtga

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