Setaria viridis (green foxtail): 117860606
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Entry
117860606 CDS
T07951
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03022
Basal transcription factors
svs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117860606
09124 Replication and repair
03420 Nucleotide excision repair
117860606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117860606
03400 DNA repair and recombination proteins [BR:
svs03400
]
117860606
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117860606
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117860606
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
117860606
NCBI-ProteinID:
XP_034599827
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All DBs
Position
6:complement(5039712..5053738)
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AA seq
614 aa
AA seq
DB search
MPSSATANCKAAAAAAMGSMTIGATYKATPGVLRMDEDEFTFTPNDTRSAMKLNVDFRSI
KCHKFGSKQARSLLKLCRDPGEGGDYMFEFDNVADRDQCRDFIARVLGQHQGTIPPRPNV
PPESVASTGLEQLSAAEVERRMKLLQENRELQKLHRKFVLGKILQESEFWATRKNLIDEE
ANKASKQRPGFKSAMLDLRPSADGQTNRVTFSVNKEIIHQIFVEKPAVHRAFLDFVPEKM
SEDHFWSKYCEAEYLLRTKNTALAAAQAAEDEVLAVSLKSDDVVAKEAKFKIKQVDPTLD
MEADAGDYYIHLLVCWYCYHGFVPDHRILRDGSIQTVDPDSEFVMRTLSQDLNQHAAVVL
EGRSRDIKLTDTKTVAEALARLKKEPSSSYNTDDANHERLVKVARMTYIEDLQAPQNILY
APLCIKNPQEYFDSQQANALRSLDGSNDGKEACNCSLSTDDAFFHLIDQVSSIKANGLNC
DVVHSNLALKVFSELNKGIPYSRRRNLKNPHENLLGQLPCQTRDELVDHWTDIQELLRHF
WSSYPITSAVLCDKVERLKGAMAQIYQKLQDMKESAPPEARHEISRLVKPMTQAMDAAFS
YDLEQHQKSSKATN
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgagtgcgacagcgaactgcaaggcggcggcggcggcggcaatggggtcgatg
acgatcggggccacgtacaaggccaccccgggcgtcctccgcatggacgaggatgagttc
actttcacccctaatgatactcggtcagcgatgaagctcaatgtcgatttccgaagcatc
aaatgtcacaagtttggtagcaaacaggcacgttcattgttgaagctttgcagagaccct
ggcgagggcggagactacatgtttgagtttgacaatgttgctgatcgcgatcaatgccgg
gactttatagccagggttttaggccaacatcaagggacaattcccccaagaccaaatgtg
cctcctgaatcagttgcttcaactggtttggaacaactcagtgctgcagaagtggagcgg
cggatgaaattgctgcaagaaaatagagaattgcagaagttacataggaagtttgtcctt
gggaagattttgcaagaatctgaattttgggcaacacgaaagaatttaattgatgaggag
gcaaataaagcatcaaagcaaaggccaggtttcaagagtgccatgctagatctcaggcca
tctgctgatggtcagacaaacagggttactttcagtgttaataaggagataattcatcag
atttttgtggaaaagcctgctgtccatcgggcatttttggattttgttccggaaaagatg
tcagaagatcatttttggtcaaaatactgtgaagctgagtatctactcagaacaaaaaat
actgcattggcagcagctcaagctgctgaagatgaggtactagctgtgtccctgaagagt
gatgatgtagtagccaaggaggcaaagttcaagataaaacaagtggatccaacgttagac
atggaagcagatgcaggagattattacattcatcttctggtgtgttggtactgctaccat
ggctttgtacctgaccacaggattctccgtgatggaagtatacagacagttgatcctgat
agtgaatttgtcatgagaacgttgtctcaggatctgaatcagcatgcggctgttgttctt
gaagggagatctcgagatataaaattaactgatacaaagactgtagcagaggcacttgca
aggctaaagaaggaaccatcttctagttataatactgatgatgctaatcatgagaggttg
gtaaaggtggcccgcatgacttatatagaggatctgcaagccccacaaaatatcctgtat
gcaccactttgtataaagaatcctcaagagtattttgattctcagcaagcaaatgctctg
agatctttagacggcagcaatgatggaaaagaagcctgtaactgcagcctgagcactgat
gatgcattctttcatttgattgatcaagtatcttctataaaagctaatgggttgaactgt
gatgttgttcattcaaatctggctcttaaggtttttagtgagttgaacaaagggattcca
tattcaagaagacgtaaccttaaaaatccccatgagaatcttcttggtcagctgccttgc
cagacacgggatgaacttgtggatcattggacagacatccaggaactgttgcgtcatttt
tggtcatcatatccaatcacaagtgcagtcctctgtgataaggtcgaaaggttgaagggc
gcgatggcacagatatatcagaagctgcaggatatgaaggaatcagcacctcctgaagca
aggcacgaaatatcccggctagtgaagcccatgactcaggccatggacgctgccttcagc
tatgatttggaacagcaccagaaatcctcaaaggcaacgaactag
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