Setaria viridis (green foxtail): 117860626
Help
Entry
117860626 CDS
T07951
Name
(RefSeq) RNA polymerase sigma factor sigA
KO
K03086
RNA polymerase primary sigma factor
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117860626
Transcription machinery [BR:
svs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
117860626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
HTH_28
VIR_N
Motif
Other DBs
NCBI-GeneID:
117860626
NCBI-ProteinID:
XP_034599865
LinkDB
All DBs
Position
6:complement(4034269..4038084)
Genome browser
AA seq
499 aa
AA seq
DB search
MTATPAVIGLSAGNRLLAASFGPAADLAPPDAHPSLQFAPAAPKLAVVVAHRASASSSYP
AGHARAHAVRALRNHSAPALAPPPPPPPPEDPAALAPDLDSAFEFESSLEAIVLLQRSML
EKQWELPFEDEDEEEHHSESLFAKSTVVVARSGVSARQRRMSGRRRGTGRKSVAISPELM
QSRNRIYLRGTVSKELLTHKQVVQLSKKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLR
ISAPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKF
DASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRSAKYALEDQGIAPTT
ENIAGSLNISEKKVNNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDENVANDPWHGF
EERYLKEEVNNLINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLVAM
EKLKHAARRKHLDALLEDY
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgacgccggcggtgatcgggctgagcgccggcaaccgcctcctcgcggcctcc
ttcggccccgccgccgacctcgcgcccccggacgcgcacccgtcgctgcagttcgcgccc
gccgcgcccaagctcgccgtcgtcgtcgcgcaccgcgcctccgcctcctcctcctacccc
gccggccacgcgcgcgcgcatgccgtccgcgcgctcaggaaccactccgcgcccgcgctc
gccccgccgcccccgccgcctccaccggaagaccccgccgcgctggccccagacttggac
tcggcgttcgagttcgagtcctcgctcgaggccatcgtgctgctgcagcgctccatgctc
gagaagcagtgggagctgccattcgaggacgaagacgaggaagaacaccacagcgagagc
ctttttgccaagtccactgtggtggttgcgcggtcgggcgtgtcggcgcggcagcggcgg
atgagcggccggcggcgtggcaccgggcggaagagcgtggccatcagcccggagctgatg
cagagccggaaccgcatctacctccggggcaccgtcagcaaggagctcctcacgcacaag
caggtcgtccagctctccaagaagatcaaagacggcatttggctccagcaccaaagatca
aagctgaaggagaaactggggaatgagccttcatacaagcagctggcgcagtcgctccgg
atatcagcccctgaactgcgcgcaaggatgcgtgagtcatttcttgcaagggagatgttg
acaatgagcaacatccgtttggtgatatccattgcccagaagtatgacaaccttggtgtc
gagttggcagaccttattcagggtggtctgattgggctactccgtgggatcgaaaagttt
gatgcatcaaggggatttaggatttccacttacgtatactggtggattcgtcagggtgtt
tcgagagcattggctgagaactcaaaaacattcaggcttcctacttatttgcatgagagg
ctgattgcaattcgtagtgcaaagtatgcattggaagaccaaggaattgctccaacaact
gaaaacatcgcagggtcactcaatatatcagaaaagaaagtaaacaatgctacagaggct
gtgaacaaggttctttcactggatcaacaggcattcccctccttaaatggtctacctggc
gagacactccatagttatatagaggatgaaaacgttgcaaatgatccatggcacggattt
gaggagcggtatctcaaggaggaagtcaataatcttataaattcaactctcaacgagcga
gagagggacattattcggttatatcacggcatagggaaacaatgccatacatgggaagat
atcagcagacagtttgggttgtcgagggagcgtgtgaggcaagttggactcgtcgccatg
gagaagctgaagcatgctgcaaggaggaaacatttggatgcattgcttgaggattattga
DBGET
integrated database retrieval system
