Setaria viridis (green foxtail): 117860998
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Entry
117860998 CDS
T07951
Name
(RefSeq) DNA polymerase I A, chloroplastic
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03030
DNA replication
svs03410
Base excision repair
svs03420
Nucleotide excision repair
svs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117860998
03410 Base excision repair
117860998
03420 Nucleotide excision repair
117860998
03440 Homologous recombination
117860998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svs03032
]
117860998
03400 DNA repair and recombination proteins [BR:
svs03400
]
117860998
Enzymes [BR:
svs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
117860998
DNA replication proteins [BR:
svs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
117860998
DNA repair and recombination proteins [BR:
svs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
117860998
NER (nucleotide excision repair)
GGR (global genome repair) factors
117860998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
117860998
NCBI-ProteinID:
XP_034600339
LinkDB
All DBs
Position
6:3621594..3630295
Genome browser
AA seq
1018 aa
AA seq
DB search
MAVAGPAPAPLLRCRGSAPPWLASSSPFFSRRRARRSSPPPALSGCRRQNYSHSSDMEVR
GSSTFKLGFYANLNVQNIAQEWLVESRRLFYLRTVNSVTNNIFKGTTPLRAENLQNELSE
DRRGLNHPSLHNLREFISSKSIVNRHENTELVRHSMINHVQSVFPVSAVNNSVKQSMPRG
PNVTLRDISNTEAVLELDDKVHDGDDKKVKKPVVKKWVSSLPPKASFSEESVKARKALAG
IYNKVLVVDNIESARTIVQLLTTKYRNFIHACDTEVSNINVKEETPVGHGHVTCFSIYSA
NSNAQVADFGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDSHVIENHGVK
VAGFHADTMHLARLWDSSRKTDGGYSLEGLTNDRRVMDAVLEDLPNAGKTSMKTIFGRKK
VRKDGSEGKVISVDPVEKLQREDKELWICYSSLDSMSTLRLYESLKRKLETKEWIFDGCP
RGTMYDFYEEYWRPFGAILVKMETEGMLVDRGYLSEIEKAAIAEREVAANKFRKWASKYC
PDAKYMNVNSDTQIRQLLFGGIENRHKSGETWPLSKTFKVPNEETVDTEGKKTSKYRTIK
LCSIVEDLKIDMFTPSGWPSVSGDALRSLAGKIPTEHIYTMDDCDEDSSGSEDPEQEIDE
NSSYGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISNFILPLQGDHISCAEGRIHCSL
NINTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLTNC
KSMLDAFKAGGDFHSRTAMNMYQHIRDAVDEKKVLLEWHPQPGQEKPPVPLLKDAFGAER
RKAKMLNFSIAYGKTAVGLSRDWKVSVKEARDTLKLWYGDRKEVLAWQKRQKKLAHEKCE
VYTLLGRSRRFPNLTQFGPGQRGHIERAAINAPVQGSAADVAMCAMLEIERDTRLKELGW
RLLLQVHDEVILEGPSESAETAKAIVVECMSKPFYGTNILNVDLAVDAKCAKSWYAAK
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcggggccggcgccggctccgcttctgcggtgccgcggctcggcgccgccg
tggctcgcgtcgtcgtcgcccttcttctcccgccgccgcgcccgccgctcctcgccgccc
ccggcgctctccggatgcaggaggcaaaactattcccatagctcagatatggaagttcga
ggaagcagcactttcaagcttggattctatgccaacttaaacgtgcaaaatattgcacaa
gaatggcttgttgagagcaggaggctgttttatctcagaaccgtcaacagtgtcacgaat
aacatctttaagggcaccactcctctacgggctgagaacctacaaaatgaactctcagaa
gatcgcaggggcttaaaccacccttccttgcataatctaagagagtttatatcatccaag
tcaattgtaaatagacatgaaaataccgaactggtcaggcatagtatgataaatcatgtg
caatcagtgttcccagtaagtgctgttaataatagtgtcaaacagagcatgcctagaggc
ccaaatgttactttgcgtgacatctctaatacagaggcagttttggagctggatgataaa
gttcatgatggtgatgacaaaaaggtcaagaaacctgtagttaaaaaatgggtttcatct
ttgccacctaaagcatccttctctgaggaatctgtgaaagctcggaaggcacttgctggc
atctacaacaaagttttggtagttgacaatatcgagtcagctaggaccattgttcaactg
cttactacaaagtacaggaactttattcatgcatgtgacacggaggtatcaaatatcaat
gtcaaagaagagacaccagttggtcatggacacgtaacatgctttagtatctattcagca
aattctaatgcacaagtggctgattttggaaatggcaaaacttgcatttgggttgatgtt
ctggatggtgggagagatgtcctgatggagtttgctcctttttttgaagatccatccatc
aagaaggtttggcataattatagctttgatagccatgttattgagaaccatggagttaaa
gtagctgggtttcatgctgatacaatgcatcttgcacgcctttgggattcatcgaggaaa
actgatggtggatattcacttgaaggacttacaaatgatcgtagagtcatggatgctgtt
ctagaagatttacctaatgctggaaagacatcaatgaaaaccatatttggcaggaaaaaa
gttagaaaggatggatctgaagggaaagtcatatctgttgacccagttgaaaagttacaa
agggaagacaaagagttgtggatttgttattcttcactagattcaatgagcaccttgagg
ctttacgagagcttaaaaagaaagcttgaaacaaaggaatggatctttgatggttgcccc
aggggcacaatgtatgatttctatgaagagtattggcgtcccttcggtgccattcttgtg
aagatggaaacagagggaatgcttgttgatcgtggttacctttcagagatagaaaaggct
gctattgctgaacgagaagtagctgcaaataagtttcgaaaatgggcatctaaatactgt
cccgatgccaagtacatgaatgtgaatagcgatactcaaattcgccaacttctctttggt
ggcattgagaatagacataaatctggtgaaacttggccactcagtaaaacttttaaagtg
ccaaatgaagaaactgtagatacagagggaaagaagacttcaaagtatcgtacaatcaaa
ctttgcagtattgtcgaagatctgaaaattgatatgttcaccccaagtggctggccatca
gtcagcggggatgcattgagaagtttggctggtaaaatacccacggaacatatttacaca
atggatgattgtgatgaagattccagtggttcagaagatccggagcaggaaatagatgaa
aattcctcatatggaacagcatatgaagcgtttggtggaggaaagaagggaaaagaagca
tgccatgcaattgcagctttatgtgaaatatgttctatcgattcattgatatccaatttc
attcttcccttgcagggagatcatatatcatgtgcagaggggcgcattcactgttcatta
aatatcaatactgagacagggcgcttgtcagcacgaactccaaatctacagaatcaacct
gcccttgaaaaggataggtataagattcggcaagccttcgttgcggctccaggaaattct
cttattgttgctgattatggtcagctggagctgaggatcttagcccaccttactaattgt
aaaagcatgctggatgctttcaaggctggtggtgacttccattctaggactgccatgaat
atgtaccagcatatccgtgatgctgttgatgaaaagaaagttcttcttgagtggcatcct
caacctggtcaagagaaacctccagtgccgctattgaaggatgcttttggtgctgagagg
aggaaagctaaaatgcttaatttctccattgcgtacggaaagacagctgttgggctatcc
cgggattggaaggtttctgttaaggaggcaagggatacgcttaagctatggtatggagat
agaaaagaagtgttagcttggcaaaagaggcagaagaagcttgcacacgagaaatgtgaa
gtttacactttgctcggccgatcgcgccgatttcctaacttgactcaatttggtcctggt
caacgaggtcatattgagcgtgctgctataaatgcaccagtgcagggaagcgcagcagat
gttgctatgtgtgccatgcttgagatcgaaagggatacccgtcttaaggagcttggttgg
aggctcctattgcaggtgcatgatgaagtgatactggaagggccttcggaatctgctgag
acggccaaggccatagtagtggagtgtatgtccaaacctttctacggaactaacatcctg
aacgtcgacctggctgttgatgccaagtgcgcaaagagctggtatgctgccaaatag
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