Setaria viridis (green foxtail): 117861283
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Entry
117861283 CDS
T07951
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
117861283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117861283
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
117861283
BRITE hierarchy
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GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Aha1_N
Glyco_hydro_95_C
Motif
Other DBs
NCBI-GeneID:
117861283
NCBI-ProteinID:
XP_034600702
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Position
6:27918596..27924639
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AA seq
863 aa
AA seq
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MRRTRSQSASEAKPALPSAGPGTEAATAGAGRRRASPAAKGKSPAKVETGSPLGNTRKKG
RAKAEPKDNASMERCSGGSRGKNNLEEQMEAVRDNDAVDMDWEEGHVEQNEYSHDLGETV
TVEFADDVPSSTSKKTVRRATAEEKELAELVHKVHLLCLIARGRVVDKACNDPLIQASIL
SLVPNHVLWSFTDVTNLRAVNLRNLVSWFHRTFCVTAQSTDRGSFVSNLAFTIQDRVGTA
EEVCALSVALFRALNLTARFVTNLDVAGLKPDTKVMGTLNQDASRLCTRSLPYSSPAADG
NVVSSPALLKDNTQDSVNMNQQRGGPGKSKQTSSCKRSLSKTLSSIKADNESSCISASSQ
LPSTSGNAEVPKRKGDVEFELQLEMALSATAAETQNNNQATHMSQSISSLQDSTPPMKKL
RQNTEATSTSSAVWSRSAGAPLYWAEVYCSGQASTGRWVHADVVNDLLDAERKVEASSAV
CKKPLRYAVAFAGNGAKDVTRRYCLQWHRIAQGRVNPEWWEDVLAPLKQMELTATNNSED
MELQTRALTEPLPTSQQAYKDHHLYALEKWLHKNQILHPKGPVLGFCKGHPVYPRSCVQT
LQSRHGWLREGLQIRENELPAKVVTRPKRAFNAQSVESSANEDALKPNLELYGEWQLEPL
QLPHAVDGIVPKNERGQVDVWSEKCLPPGTVHLRLPRLFQVAKRLGIDYAPAMVGFDYRS
GRCLPVFDGIVVCTEFKHAILEAYAEEEEKRRAEERKQEEAQALSRWYQLLCSIVTTQRL
KESYKTPSHGLGHEGPPRNDNNIQKNSYSSRRSEREPSSSKLQTDQDHEHVHEYPEEDQS
FDEETFVRTKRCPCGFSIQVEEL
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgcggcggaccaggagccagtccgcgagcgaggcgaaaccggcgctgccctctgccggg
ccgggcacggaggccgcaaccgccggggcgggtcgccggagggcttcgccggcagcgaaa
gggaaatctcccgccaaggtggaaacaggatcaccacttgggaatacacggaaaaagggc
agagccaaggcagaaccaaaggataatgccagcatggagaggtgcagtggagggagccgc
ggaaagaacaatttggaggaacagatggaggctgttcgtgacaatgatgctgttgacatg
gactgggaagaggggcatgtagaacaaaatgagtattcccatgaccttggagagactgtc
actgttgagtttgctgatgatgtaccttcttccactagcaagaagactgttcggagggct
actgctgaagagaaggagttggctgaacttgtgcacaaggtccatttgctctgcctaata
gcaaggggtagggtggttgacaaggcttgcaatgatcctcttattcaggcctcgattctc
tctcttgtaccgaaccatgtattatggagttttactgatgttacaaacctgagagctgtt
aatctacgaaatcttgtgagctggttccatcgtactttttgtgtaaccgcacaatccact
gacaggggatcttttgtatcaaatttggctttcactattcaagatcgtgtaggcactgca
gaagaggtttgtgcactttcagtggcattgttcagggcacttaacttaacagcaaggttt
gttacgaatctggatgttgctggactaaagcctgatactaaagtgatgggaacactcaat
caagatgcatctaggctttgtacaaggtcactaccgtatagttctccagctgctgatggt
aatgtggttagttctcctgctctactgaaagataatactcaagatagtgtcaacatgaat
caacaaagaggaggtcctggaaaatcaaagcagacctcttcctgcaagagaagtttatct
aaaactttgtcaagcataaaagcagataatgaaagtagttgtatatcagccagcagccaa
cttccatccacttctggtaatgctgaagtgccaaaacgaaaaggggatgtggaattcgag
ttgcaactggaaatggctctttcagccacagctgctgaaacccaaaataataatcaagct
acccacatgagtcagtcgattagtagcttacaagattctaccccaccaatgaagaaattg
cgtcaaaatacagaagctacatccacctccagtgcagtttggtcaagaagtgctggagct
ccattatattgggctgaggtatactgcagtgggcaggcgtcaactggaagatgggtgcat
gctgatgttgtgaatgatctccttgatgctgaacgaaaagtagaagcttcttcagctgtt
tgcaagaagcctttaagatatgctgttgcttttgctggaaatggagccaaggatgtaaca
agaaggtattgcttgcaatggcacagaattgcacaggggagagtgaatccggagtggtgg
gaggatgttttggcaccactaaagcagatggaactgacagcaacgaacaattctgaagac
atggaacttcaaaccagagccctaacagaaccgcttcctaccagtcaacaggcctacaaa
gaccatcatctatatgctcttgagaagtggcttcacaagaaccaaattcttcaccccaaa
ggtccagttcttggcttctgcaaagggcatcctgtttatccaagatcctgtgttcaaaca
ctgcaatcaagacatggatggttgcgggagggccttcaaatccgagaaaatgagttgcct
gcaaaggttgttacacgtccaaagagggctttcaatgctcagtcagttgaatcaagtgct
aatgaagatgctcttaagccaaacttggaactatacggtgaatggcaactggaaccgctg
caacttcctcatgctgtagacggcattgtgccaaagaatgaacgaggccaagttgacgta
tggtcagagaagtgccttccacctggtacagtacacttgaggttaccaagattattccag
gttgcaaagagacttggcattgattatgctcctgccatggttggatttgattatcgaagt
ggtcggtgccttccagttttcgatggaattgttgtctgtaccgaatttaagcatgctatc
ctggaggcatatgcagaagaagaggagaagagacgagctgaggagaggaagcaggaggaa
gctcaggcactctccagatggtatcagctgctctgctccattgtaacaacacagagattg
aaggagtcatacaaaacaccttcacacgggcttggtcacgaagggccgcccagaaatgat
aataatatccagaaaaacagttacagcagtcgacgctcagaaagagagcctagttcaagc
aaactgcagacagatcaagaccatgagcatgtgcacgagtatccggaggaagaccagagc
ttcgacgaggagacctttgtgcggacgaaacgctgcccatgtggtttttcaatccaagta
gaggagctgtag
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