KEGG   Setaria viridis (green foxtail): 117861305
Entry
117861305         CDS       T07951                                 
Name
(RefSeq) histone deacetylase 6 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03082  ATP-dependent chromatin remodeling
svs03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    117861305
   03083 Polycomb repressive complex
    117861305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:svs03036]
    117861305
Enzymes [BR:svs01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     117861305
Chromosome and associated proteins [BR:svs03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     117861305
   HDAC complexes
    Sin3A-HDAC complex
     117861305
    BRAF-HDAC complex
     117861305
    REST complex
     117861305
    SHIP complex
     117861305
    MiDAC complex
     117861305
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     117861305
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    117861305
  Chromatin remodeling factors
   NuRD complex
    117861305
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 117861305
NCBI-ProteinID: XP_034600728
LinkDB
Position
6:complement(20698263..20702723)
AA seq 458 aa
MAASGEGASLPSPAGGEDAHRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGL
HRLLELSRPYPASDADIRRFHSDEYVAFLASATGNPGMLDPRAVKRFNVGEDCPVFDGLF
PFCQASAGGSIGAAVKLNRGDADITINWAGGLHHAKKSEASGFCYVNDIVLAILELLKFH
RRVLYVDIDVHHGDGVEEAFFTTNRVMTVSFHKYGDFFPGTGHITDVGAAEGKHYALNVP
LSDGIDDATFRDLFQCIMKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRF
LRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYTLHIQP
KSVENTNTTKDLENIKNMILENLSRIEHVPSTQFHDRPSDPEAPEEKEEDMDKRPPQRSR
LWSGGAYDSDTEDPDNVKSEGNDLIANSHMKEEPNDGL
NT seq 1377 nt   +upstreamnt  +downstreamnt
atggcggcctccggcgagggcgcgtcgctgccgtctccggcgggcggcgaggacgcgcac
cgccgccgcgtgagctacttctacgagccgtccatcggcgactactactacgggcagggc
cacccgatgaagccccaccgcatccgcatggcgcactcgctggtggtccactacggcctc
caccgcctcctcgagctctcccgcccctacccggcctccgacgccgacatccgccgcttc
cactccgacgaatacgtcgccttcctcgcctccgccaccgggaacccgggcatgctcgac
ccgcgcgccgtcaagcgattcaacgtcggcgaggactgccccgtcttcgacggcctcttc
cccttctgccaggcctctgcggggggaagcatcggcgccgcggtcaagctcaaccgcggg
gacgccgacatcactatcaactgggcgggcggcctccaccacgccaagaagagcgaggcc
tccgggttctgctacgtcaacgacatcgtcctcgccatcctggagctcctcaagttccac
aggcgtgtgctatatgtagacattgatgttcaccatggagatggtgtggaagaggccttc
ttcactacaaaccgagtcatgacagtttcctttcacaagtatggggattttttccctggt
actgggcatatcactgatgttggggcggccgaagggaaacattatgctctgaatgttccc
ctgagtgatggtattgatgatgccaccttccgtgatctgttccaatgcatcatgaagaaa
gttatggaggtttatcagccagacgtggttgtcctccaatgtggggctgactccttggca
ggagataggttaggttgtttcaacctgtctgtgaagggtcatgccgactgcctccgtttc
cttaggtcgtacaatgttccattgatggttttaggtggtggaggctacaccatcagaaat
gttgcacgctgctggtgctacgagactgcagttgctgttggagttgaacctgataacaag
ttgccttacaatgattactatgagtacttcggccctgattatactcttcatatccaacca
aaaagtgtggagaacacgaatactacaaaggacttggagaacataaagaacatgatattg
gagaacctctcaaggatagaacatgttcccagcactcagttccatgacaggccgtcagat
cctgaagctccagaggagaaagaggaggacatggacaagaggccacctcagcgcagcaga
ttatggagtggaggagcttatgattctgatacagaggatcctgacaatgtgaaaagtgag
ggtaatgacttaatcgccaactcgcacatgaaggaggaaccgaatgatggtctgtag

DBGET integrated database retrieval system