Setaria viridis (green foxtail): 117861326
Help
Entry
117861326 CDS
T07951
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03022
Basal transcription factors
svs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117861326
09124 Replication and repair
03420 Nucleotide excision repair
117861326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117861326
03400 DNA repair and recombination proteins [BR:
svs03400
]
117861326
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117861326
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117861326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
117861326
NCBI-ProteinID:
XP_034600750
LinkDB
All DBs
Position
6:complement(5021467..5029611)
Genome browser
AA seq
600 aa
AA seq
DB search
MGSLTIGAKYKTTLKDPGTPGILRMNDDKFTFTPNDPRSAMKLNVEFRSIKGHKFNKVDG
NKPALLNLSKDSDKGGGYMFEFDNVGNRDLCRDFVARVLGKHQGMPPRPTMPPEISVPSA
GMEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDVANKASKQK
PGFKTAMSDVRPSADGRTNKVTFNLTPEMIHQIFAEKPAVRRAFLDFVPKKMTDLEFWRK
YCRAEYLLRTKNTAAAAAEAAEDEELAVFLKNDDILVKEAKLKIKQVDPTLDMEADAGDD
YIHLPDHGILRDGSKETVDNDSEFARRTLSQELNRHAAVVLEGIASDVELTDAKSVAEAL
ARSKKEPPSTSAVDDTSHERLLKVARMTEIEDLQAPQSLPYAPLCIKDPREYFDSQQANA
LRSLGASNDGRKSRNCSLSTEEAFHHLTDQISSIKVNKSNCTVIQSDMAVKVLNELNEGI
SRSRRLNLKNPQEGLLGRVPQHTRDELMDHWTAIQELLRHFWSSYPITSTVLYNKVQRVK
DAMTQIYQKLQAIKESAQPDVRHEISRLVKPMTQALDAAFSHDLEQQQKSAKAGNKSNGF
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgctgacgatcggagccaagtacaagaccactctcaaggaccccggcacccca
gggatcctccgcatgaacgatgataagttcactttcaccccaaatgatcctaggtcggca
atgaagctaaatgtcgaattccgaagtatcaaaggtcacaagttcaacaaggtagatggt
aacaaaccagcattgttgaatctttcaaaagattctgacaagggtggaggctacatgttt
gagtttgacaatgttggtaaccgcgacctatgtcgagactttgtagctagggttttaggc
aaacatcaagggatgccccctcgaccaaccatgcctcctgaaatctcagttccatctgct
ggtatggaacagctgagtgctgctgaagtggagcgacgtgtgaaactgttgcgagaagat
agtgaattgcagaaattacataagaagtttgttcttggaaatattctgcaagaatctgaa
ttttgggcaacaagaaagaatttacttgatgatgtagcaaataaagcatcaaaacaaaag
cctggtttcaagactgcgatgtctgatgttaggccgtcagctgatggtcggacaaacaag
gttactttcaatctcacacctgagatgatacatcagatttttgctgaaaagcctgctgtt
cgtcgggcatttttagatttcgttccgaaaaagatgacagacctagaattttggagaaag
tactgtagagctgagtatctacttaggacaaaaaacactgcagcagcagcagctgaggct
gctgaagatgaggaattagccgtcttcctgaagaatgacgatatattggtgaaggaggca
aagttaaagataaaacaagtcgatccaacgttagacatggaggcagatgctggagatgat
tatatccatcttccggaccatgggattctccgtgatggcagcaaagagacagttgacaat
gacagtgagtttgccaggagaacactgtctcaggagctgaatcgccatgccgctgttgtt
cttgaagggatagcttcagatgtggagctgactgatgcaaagagtgtagcggaagccctt
gcaaggtccaagaaggaaccaccttccacttctgctgttgatgatactagtcatgagaga
ctgttgaaggtggccagaatgacagagatagaggatctgcaagctccacaaagccttccc
tatgcaccactttgtataaaggatccgagagagtattttgattcccaacaagcaaatgct
ctgagatctttaggtgcgagcaatgatggaagaaaatcccgtaattgcagcttgagcact
gaagaagcgttccatcatttaacggatcaaatatcttcgattaaagttaataagtcgaac
tgtacagttattcagtcagatatggctgttaaggttcttaatgaattgaatgaagggatt
tcacgttcaaggagacttaacctcaagaatcctcaagagggtctccttggtcgggtgcct
caacatacgagggacgagcttatggatcattggacggctatccaggaattgctgcgccat
ttctggtcatcatatccaataacaagcacagtcctttataataaggttcaaagagtcaag
gacgcaatgacacagatatatcaaaagttgcaggcaataaaggaatcagcacagcctgat
gtaaggcatgaaatatctcggctagtaaagcccatgactcaggccttggacgctgccttc
agccatgatctggagcagcagcagaaatcggccaaggccgggaacaaatccaacgggttt
tga
DBGET
integrated database retrieval system
