Setaria viridis (green foxtail): 117861377
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Entry
117861377 CDS
T07951
Name
(RefSeq) U1 small nuclear ribonucleoprotein C-1
KO
K11095
U1 small nuclear ribonucleoprotein C
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117861377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117861377
Spliceosome [BR:
svs03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
117861377
Complex B
117861377
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-U1
CLIP1_ZNF
Motif
Other DBs
NCBI-GeneID:
117861377
NCBI-ProteinID:
XP_034600812
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All DBs
Position
1:703936..707158
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AA seq
230 aa
AA seq
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MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ
AAAFQVGAPFNQHLLSFPGAMARPRLPILPTPGMPHGFPQAPGAPLMPGVRPPILPAPGV
PGYPGGPPTMPQPGAPPTMPPPGAPPGSMPQPGAPPGSVPMQIAPLPRPPTLPPPTSGVP
GAPIPNNAAPPSMFQTNPPPPAGPTSGAPPAPPSAPQPAFSYAQPSEGNH
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atgcctcggtattactgcgactactgcgacacctacctcacccatgactcgccatctgtc
cgtaagcaacacaatgctggatacaagcacaaggcaaatgttcgaacctactatcagcaa
tttgaggagcagcaaactcaaagtttaattgatcaaagaatcaaggaacatcttggacaa
gctgcagctttccaagtaggtgcccctttcaaccaacatctgctctcgttcccaggagcc
atggcccgtcctcgccttccaattctgccaacccctggcatgcctcatggattccctcaa
gcacctggtgcaccattgatgccaggagttaggcccccgattttaccagctcctggtgtt
ccaggttatcctggtggcccaccaaccatgccgcaaccaggtgccccaccaaccatgcca
ccaccaggcgccccacctggctccatgccacaaccaggtgcccctcctggttcggtacca
atgcagatagctcctctcccaaggcctccaacactaccacctccaacatctggggtccca
ggtgcccccattcctaacaacgcagcacctccatccatgttccaaacgaatccaccgcca
cctgcaggcccgacttctggtgctcctccggctccaccgtctgctccacagcctgcattc
tcctatgctcaaccatctgagggcaaccactga
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