Setaria viridis (green foxtail): 117861503
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Entry
117861503 CDS
T07951
Name
(RefSeq) protein CCA1
KO
K12133
MYB-related transcription factor LHY
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
117861503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
svs03000
]
117861503
Transcription factors [BR:
svs03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
117861503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
MU117
Motif
Other DBs
NCBI-GeneID:
117861503
NCBI-ProteinID:
XP_034600960
LinkDB
All DBs
Position
6:complement(4611758..4627758)
Genome browser
AA seq
747 aa
AA seq
DB search
MTSTPSDQASSCWTIPFYFCFFFLDLEMEVNSSGEETVVKVRKPYTITKQRERWTEAEHK
RFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFFTKLEKEAMNNGTSPGQAHDIDIPP
PRPKRKPNSPYPRKNGLSSETPTKELPNDKSSKSNITLSSGNVQMVGDMSLQKFQRKEVS
EKGSCSEVLNLFRDAPSASFSSVNKSSSNNGVPRGVEPTKTEIRDMTTTEKNSINPTMQE
DVKEIDVPEIGRVNGIHVSSKCDYSNEEYLDFSMQQMKLKPKSSETTYVDKQTARTSHSL
AERNGATSIPVTGTDGTRPDQTGDQVGVNGSMNPCIHPMLSTDPKFDSSATPQPFPHNYA
AFAPMMQCNCNQDTYRTFVNMSSTFSSMLVSTLLSNPAIHAAARLAASYWPAAEGNTPVD
PTQENPAEGVQGRNLGSPPSMASIVAATVAAASAWWATQGLLPFFTPPMAFPFVPAPSAA
FPTADVPRPLDKDRDSPVENAQKGCQEAQKQGQSEALRVAVSSESDGTRKGDMSLHTELK
ISPVQNTDAAPTTGADISDAFRNKKKQDRSSCGSNTPSSSDVEAGNVPEKEDKANDKAKQ
ASCSNSSAGDTNHRKFRSSGSTSDSWKEVSEEGRMAFDALFSREKLPQSFSPPQAEESKE
VAKEEEDEVTTVTVDLNKNATTIDHDLDMMDEPRTSFPNELSHLKLKSRKTGFKPYKRCS
VEAKENRVPASDEVGTKRIRLESEEST
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgacctcaactccaagtgaccaagcgagcagctgttggacaattcctttctatttctgt
ttctttttcctggatttggagatggaggtgaattcctctggtgaggaaacggtggtaaag
gtgagaaagccgtacacgataacaaagcagcgggagcggtggactgaggcagagcacaaa
cggttccttgaagccttgaaactttatggcagagcgtggcagcgcatagaggaacatgtt
gggacaaagacggctgtgcagatcagaagtcacgctcagaagttcttcaccaagttggaa
aaggaagctatgaacaacgggacttctccagggcaagctcatgacattgacatacctcca
ccacggcctaaaaggaagcctaacagtccatatcctcgaaaaaatggtctcagctctgaa
acaccaacgaaggaacttccaaatgacaagtcatcaaaatcaaatattacactgagcagt
ggcaatgtacaaatggtaggcgatatgtctctgcagaaatttcagaggaaagaggtgtct
gaaaaaggaagttgctcggaagttcttaatctcttccgagatgctccatctgcatcattt
tcttcagttaacaaaagctcttcgaataatggtgtacccaggggggttgaaccaaccaaa
acagaaatccgagatatgaccaccacagaaaagaattctattaatcccaccatgcaagag
gatgtaaaagagatcgatgttccggaaattggaagggttaatggaatccacgtcagctct
aaatgtgactattctaatgaagaatatttggacttctcaatgcaacaaatgaagctaaag
ccaaagtcttcggagacaacatacgtggacaaacaaactgcaaggacctcacactccctg
gcggagagaaatggggcaactagcattcctgttactggaactgacggaactcgtcctgat
caaacaggcgatcaagtgggagtcaatggaagtatgaacccatgcatccatccaatgctt
tctacggatccaaaatttgatagcagtgccacaccacaaccttttcctcataactatgct
gcctttgctccgatgatgcagtgcaactgcaaccaagatacctacagaacattcgtcaac
atgtcatccactttctccagcatgcttgtttccacattgttgtcaaaccctgccatccat
gcagccgctaggctcgcagcatcgtactggccagcagcagaaggtaacactcctgttgat
ccaactcaagaaaatcctgcagagggtgttcaaggaaggaacttaggctctcctccaagc
atggcttctattgtagcagctacagttgctgcagcatctgcatggtgggcaacacaaggt
cttctcccttttttcactccccccatggcttttccatttgtaccagctcctagtgctgcc
tttcccacagcagatgttccacgacctttagacaaagacagagattccccagttgaaaat
gcacagaagggatgccaagaggctcagaaacaaggccagtctgaagctttgagagttgct
gtgtcttcagagtctgatgggactagaaaaggcgacatgtctctccatactgagttaaag
atatctcctgtccagaatactgatgctgcacctactacaggagctgacattagtgatgca
ttcaggaataagaaaaagcaggatcgctcttcatgtggctccaacacaccttcaagtagc
gatgtagaggcaggaaatgttcctgagaaagaagataaggccaatgacaaggcaaagcaa
gcctcctgcagtaactcttcagccggtgacactaaccaccgcaaatttagaagcagtgga
agcacaagtgattcatggaaggaagtttctgaagagggtcgtatggctttcgatgcgctg
ttcagtagagaaaagcttccacaaagcttttctcccccacaggcagaagaatcaaaggag
gttgccaaggaggaggaagatgaagtgaccacagtgacggttgacctcaacaagaacgcc
acaacaattgatcatgatcttgacatgatggatgagccaagaacttccttccccaatgaa
ctgtcacacctgaagcttaaatcacgcaaaacaggcttcaaaccatacaagagatgttcg
gtggaagcaaaggagaatagggtgccggctagcgacgaggttggtaccaagaggattcgt
cttgagagcgaagaatcaacctga
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