Setaria viridis (green foxtail): 117861658
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Entry
117861658 CDS
T07951
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03430
Mismatch repair
svs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117861658
03460 Fanconi anemia pathway
117861658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117861658
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
117861658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
117861658
NCBI-ProteinID:
XP_034601121
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All DBs
Position
1:complement(29153747..29160077)
Genome browser
AA seq
1008 aa
AA seq
DB search
MAGAGGGDGRGGSSPAIKPISKAVVHRICSGQVIFDLSSAVKELVENSLDAGATSVEVSL
KAYGAEWFKVADNGYGISPANFQALALKHHTSKISDFSDLGSVVTFGFRGEALSSLCALG
KLTVETRTKDESVGTRLEFEHSGVVASERKTARQVGTTVTVEKLFSTLPVRSKEFNRNIR
KEYGKVISLLNAYALIAKGVRLLCTNTVGKNSKMVVLRTQGSSSMKDNIITVFGLNTFKS
LEPFSVTISDGCQVEGFLSKPGPGTGRNSGDRQFFYVNGRPVDMPKVTKLVNELYRSSNA
KQYPVAILDFRIPTTSYDVNVAPDKRKIFFSSESIILRSLREAVENLYSPQQCSFSVNRV
EDPEKEDDTVTDGHSEDTDLIEVENVSSPDNSDDKEETDSEDQVSPENKKKPSSVTKVAI
DATSREVSPLSRGTATQADRSAWLPSFSYEQPKRFPKEGKGYAPGANHFRTGLAAKSTHS
PTVQSSLMNYVSLNKRKHEDDCNLISEAPVLRRGPCLEQVRRTSLEANFILPNKPDYTDD
CSLISEAPVLRRGACSEQVRRTSLEGNFVSPNKQKHEDNCNLISETPVLRSGVGSEQVRR
TSLDANPPAALSSRTSNIPEFNLPLETNSLKQQSPRSFVSVRADVSPQHSEPPNTVICGA
KVLSPCDVLTPEPDVEEQHDRCLSISGAPNKHSEVEHLNTLKDSPLPDAHDSDNDAAVYS
ASVQYPIVQFTVADLRRRRKNGFMTSRANKANCLEKATRCYKAATLDIYVPSGDEAKSNS
LAAATNELDRLFSKDDFGQMEVVGQFNLGFIIGKLDQDLFIVDQHAADEKYNFEGLSQST
TLNIQPLLQPLRLDLSPEEEVIVSMNMNTIRTNGFVLEEDLHASPGNHYLLKAVPFSKNI
TFGVQDVKELISMLADSQGDCSIISSYKLDKTDSVCPSRVRAMLASRACRMSIMIGDPLT
KAEMRKILKNLTGLRSPWNCPHGRPTMRHLVDLRAIKNKVSAGPDAGL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggctggagctggaggaggagacgggcgcggcggctcctcgccggcgatcaagccgata
agcaaggcggtggtgcaccgcatctgctccggccaggtcatcttcgacctctcctccgcc
gtcaaggagctcgtcgagaacagcctcgacgccggcgccacctccgtcgaggtcagcctc
aaggcctacggcgcggagtggttcaaggtcgccgacaacggctacggcatctcgcccgcc
aacttccaggcgcttgctcttaagcaccacacctccaagatatcagatttctccgacctc
ggatccgtggtcaccttcggattccggggtgaagcgctgagctcgctctgcgcgctgggg
aaactgacggttgagacgaggaccaaggatgagtccgttgggacgcgtttggagtttgag
cactcgggcgtggtggccagcgagaggaagaccgcacggcaggttgggaccacggtgaca
gtcgagaagttgttctccaccttgccggtcaggagcaaggagtttaacaggaacattcgg
aaagagtatgggaaagtgatctccctgctgaatgcttatgccttgattgccaaaggggtc
agattactttgcactaatactgttggcaaaaattctaaaatggtggtgcttagaactcaa
ggcagcagttcaatgaaagacaatatcattaccgtatttggtctgaacactttcaagtct
cttgagcccttcagtgttaccatctcagatggctgccaagtagaaggctttctctcaaaa
cctggacctggtactggtcgcaattcaggagatagacaattcttctatgtgaacggcaga
cctgttgatatgccaaaggtcacaaaacttgtcaatgagctgtacagaagctcgaatgcc
aagcaatatcctgtggctatcctggatttccgtattccaaccacatcctatgatgtgaat
gtcgcacctgacaagagaaagattttcttctcatctgagagtataattctgcggtcttta
cgtgaagctgttgaaaatctgtattcccctcaacaatgtagtttctcagtcaatcgtgtt
gaagatcctgaaaaggaagacgatactgttactgatgggcatagtgaagacacagatttg
atagaagtagagaatgtttcatctccggacaatagtgatgacaaggaagaaacagacagc
gaggatcaggtttcaccagagaacaagaaaaagccttcttcagtgacaaaggtagccatt
gatgccacatctagagaagtgagccccttgtcaagaggcacagccactcaggctgataga
tctgcctggcttccatccttctcatatgaacaacctaaaagatttcctaaagaaggaaaa
ggttatgcaccgggagcaaatcatttcagaacagggcttgctgcaaaatctacccattca
cctactgttcaatcttctcttatgaactatgtatcactaaacaagcggaagcacgaagac
gattgtaatcttatttctgaagctccagtgttgagaagagggccatgcttagaacaagtg
aggagaacaagtttggaagcaaattttatattgccaaacaagccggactatacagatgat
tgcagtcttatttctgaagctccagtgctgagaagaggggcatgctcagaacaggtgagg
agaacaagtttggaaggaaactttgtttcaccaaataagcagaagcacgaagataattgc
aatcttatctctgaaactccagtgttgagaagtggggtaggctcagaacaagtgaggaga
acaagtttagatgcaaatccaccagctgcattaagctcaaggacatctaatattcctgag
ttcaatttgcctctggaaacaaactctttaaaacagcaatccccacgatcttttgtatct
gtgagggcagatgtttcaccacagcattctgaaccgcctaatactgtgatctgtggtgcg
aaagtattaagtccatgtgatgttctcactccagaacctgatgtggaggaacagcatgat
cgatgtctttcgatttctggtgctcccaataaacattcagaagtggaacatctgaataca
ttgaaggatagtcctttgcctgatgctcatgattctgataatgatgctgcagtatattct
gcatctgtacaatatcccattgtgcaatttactgttgctgatcttaggagaagaagaaag
aatggttttatgacatcgcgtgcaaataaagcaaattgtcttgagaaagctacaaggtgc
tataaagctgcaacactggatatctatgtaccctcaggtgatgaggcaaaatcgaattcg
ttagctgcagctaccaatgaattggacaggcttttcagtaaagatgattttggacaaatg
gaggttgttgggcaatttaatcttggttttatcattggaaagctggaccaggatctgttt
attgtagatcagcatgctgctgatgagaagtacaacttcgagggcctttcgcaatcaaca
actttgaacatacagcctcttctccagccactgaggcttgatctatcaccggaggaagaa
gtaatagtttctatgaacatgaacactatcagaacaaatggctttgttttggaagaagat
ttgcatgcttcccctggtaaccattatcttttgaaagcggtgcctttcagcaaaaatatt
acatttggtgttcaagatgtaaaggagctgatctccatgcttgctgatagtcaaggagac
tgttcgataatcagtagctacaagctggataaaactgattctgtttgcccttcgagggtt
cgtgctatgttggcttcaagggcttgccgaatgtctattatgattggcgatccactgaca
aaagccgagatgagaaagatacttaaaaatctaacaggattaaggtccccatggaactgc
ccacatgggaggccaacgatgcgccacctagttgatctgcgtgctataaaaaacaaagtt
tctgcagggccagatgcggggctttga
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