Setaria viridis (green foxtail): 117861760
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Entry
117861760 CDS
T07951
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs00040
Pentose and glucuronate interconversions
svs01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117861760
Enzymes [BR:
svs01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117861760
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
117861760
NCBI-ProteinID:
XP_034601194
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Position
6:16175283..16177148
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AA seq
372 aa
AA seq
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MASKEFLLLAFLFVLHGAMTNVHGANIIDRCWRRQRNWAANRQRLAVCSVGFAGKMRQNR
GPGVIPYTVTDPGDDPVRPGPGTLRYGATVLPGKVWITFQRGMHIRLVQPLFVKSFTVID
GRGADVHIAGGAGIMLYQVSNVIIHGLHIHDCRSQPTGQVVVPGGAVRPAGGMDGDAIRL
VSSTKVWIDHNTLSRSEDGLLDVTVGSTDVTVSNNWFLNHDKVMLLGHDDGHAADRRMRV
TVAFNRFGPNVNQRMPRIRHGYAHVVNNLYDGWVQYAIGGSMGPSVKSQGNLFVASGADN
KKVTRRMPVGGKDWDWASIGDSFQNGAFFKQTGSRVRPNYNKHQAFAAASANEVRSLTKD
AGALSCKAGSAC
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atggcctccaaagaattcctactcctcgctttcctttttgtcctccatggcgcaatgacg
aacgtccatggagcaaacatcatcgaccggtgctggcgccgccagcgcaactgggccgcc
aatcggcagaggctcgccgtgtgctccgtgggcttcgcagggaagatgcggcagaaccgt
ggccccggggtgatcccatacacggtcactgaccccggcgacgaccccgtgcgcccaggc
cccggcaccctgcgctacggcgcgacggtgctgcccgggaaggtctggatcaccttccag
aggggcatgcacatcaggctggtgcagccgctcttcgtcaagagcttcacggtcatcgac
gggcgcggcgccgacgtgcacatcgccggcggcgcgggcatcatgctctaccaggtgagc
aacgtgatcatccacgggctgcacatccacgactgccggtcgcagcccacggggcaggtg
gtcgtccccggcggcgcggtgcggccggccggtggcatggacggcgacgccatccggcta
gtgtcgagcaccaaggtgtggatcgaccacaacaccctgtcccggagcgaggatgggctc
ctggacgtgacggtcggctccacggacgtgaccgtctccaacaactggtttttgaaccac
gacaaggtcatgctgctcggccacgacgacggccacgccgccgaccgccggatgcgcgtc
accgtcgcgttcaaccgcttcggccccaacgtgaaccagcgcatgccaaggattaggcac
ggctacgctcacgttgtgaacaacctctatgatggatgggtacaatacgccatcggagga
agcatggggccgagcgtcaagagccagggcaacctgttcgtagcctccggggcagataac
aagaaggtgacgagaaggatgccggtcggggggaaggattgggactgggcctccatcggg
gactccttccagaacggcgccttcttcaagcagacgggcagcagggtccggccgaactac
aacaagcaccaggcattcgcggcggccagcgccaacgaagtacggtcgctgaccaaggac
gccggcgctctcagctgcaaggccgggtccgcgtgctga
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