Setaria viridis (green foxtail): 117862307
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Entry
117862307 CDS
T07951
Name
(RefSeq) CLIP-associated protein
KO
K16578
CLIP-associating protein 1/2
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
svs03036
]
117862307
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
svs04812
]
117862307
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
117862307
Cytoskeleton proteins [BR:
svs04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
117862307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
HEAT_EF3_N
CEP104-like_TOG
XMAP215_CLASP_TOG
HEAT
HEAT_EZ
TOR1L1_N
Vac14_Fab1_bd
Adaptin_N
PDS5
TTI1
HEAT_DAAF5
Sec7-like_HDS
Tti2
UTP20
Sec7-like_HUS
MMS19_C
Cnd1
TPR_TNPO3_IPO13_3rd
V-ATPase_H_N
Motif
Other DBs
NCBI-GeneID:
117862307
NCBI-ProteinID:
XP_034601705
LinkDB
All DBs
Position
1:complement(30965953..30978069)
Genome browser
AA seq
1416 aa
AA seq
DB search
MEAALEAARAKDTKERLAGVERLHEALEAAARRGLSAAEVTSLVDTCMDLARDGNFRIAQ
GGLQAVSAAAVLAGDHFKIHLNALVPAAVERLGDGKQPVREAARQLLVTLMEVSSPTIIV
ERAGNYAWTHKSWRVREEFVRTVAAAVGLFASTELPLQRVLLSPVLQLMNDLNRSVRDAA
ISCIEEMYKNMGSQFHEELQRHNLPAYMLKEINSRLDKIEPNAPSSNGARMQCRANESRS
ISANPKRGSPRKKSAPRESTLFGGGMDINEKPVEPIRVHSEKELVRDFEKVASALNPEKD
WSIRIAAMQRIEALVYGGAMDYPSFLMLLKQLVPPLSSQLSDRRSSIVKQACHLLNVLSK
ELLGDFEPSAEIFIPVLFKLVVITVLVIAESADNCIKSILRNCKVSRVLPLIADTAKNDH
SAILRARCCEYALLILEYWADTPEIRRSADLYEDLIKSCVADAMSEVRAMARTCYRMFTK
TWPERSRRLFMSFDPAIQRIINDEDGGKHKRHPSPSLHERGVQLSRASSHAGGNHFGYGT
SAIVAMDKGAAISSESSLSSSSLLLSQSKTIGRSAERSIESVLSSSKEKVSAIESLVKGV
SMSDRHNFSAIRSTSLDHGVDHTSSHDPPTLSATRASYSSLNGITSSRNDGSSKERSSSP
YLRNLSSELISGLSLPSLRSSGRSQDGSTMEENHDTWPTRRSPKVQMHKHYVDMPNRDVR
YRNSLNSHVPHFQGPLRKQVASRASASGRHRFDDDHVPSNDMRGYTNGLASLNDALSEGL
SPSSDWEARVAAFNFIQILLQQGQKGIQDITQHFEKVMKLFFCYMDDSHHKVAHAAFSTL
ADIIPAFKKHFESYVERILPHIFSRLIDPKELVRHPCSSTLEIVGQTYSIDTLLPALVRS
LDEQRSPRAKLAVLEFANKSFDNYTVDSEGYSNSGFLKLWLTKLAPLIHEKNAKLKEASI
SGMISVYSHFDSAVVINFILSLSIDEQNIVRRALKQYTPRIEVDLVNYLQNKKERPHPKS
YDQVDSSASSEDGYALTFKKSFPFGRFSDSLVDTESRKKMNTVQESALLNVPISRTTSDV
CTDHAKQCFGRASEADVLMQSRELKNNTCTVVEAVHSWADYPEKSDATMDDENSTGTTRL
DLGHLPSDGHSSALAISGEHTQEGDPFVDRSSVNIIPHTSNGPSVPHLLHRIGNGGEVSC
LDRQEALRQLVRASTNKDNFIWKKYFNQILTTVLEVLDDADSSVREISLLLVAEMLHNQK
DSMEQSIEIVLEKLLHVTKDDVAKVSNEAHQCLYVVLAKYDPFRCLAIIVPLLASDDEKT
LVMCINCLTKLVGRLSHDELVTQLPSFLPAVFDAFSNQSPDVRKAVVFCLVDMYIILGKE
FVPYLEGLSSTQLRLVTIYANRISQARSGAPVAATQ
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgcgctggaggcggcgcgcgccaaggacacgaaggagcggctggcgggcgtg
gagcgtctgcacgaggcgctggaggccgcggcgcggcgcgggctgagtgccgcggaggtg
acgtcgctggtggacacctgcatggatctcgcccgcgatggcaacttccgcatcgcccag
ggcgggctgcaggccgtctccgccgccgcggtgctcgccggcgaccactttaagatccac
ctcaacgcgctcgtgcccgccgccgtcgagcggctaggcgacggtaagcagcccgtccgc
gaagccgcccggcagctgctcgtcaccctcatggaggtttcttcaccgacaatcattgtt
gaaagagctggaaattatgcatggactcacaagagctggagagtgcgggaagagtttgta
cgcacagttgcagctgcagttgggctttttgcttctacagagctcccgcttcagcgagtg
ttactttcacctgttctgcaattgatgaatgatttgaaccgaagtgttagagacgctgcg
atctcatgtattgaggagatgtacaaaaacatgggatctcagttccacgaagagttgcag
cgccataatctacctgcttacatgctaaaggaaataaattcaaggttggataaaatagaa
ccaaatgctccctcatccaatggagctagaatgcagtgtagggccaatgaatctagatct
attagtgctaatccaaaaagaggcagtccaaggaaaaaaagcgcgccaagggaaagcaca
ttatttggaggtggcatggatatcaatgagaagccagtggaacccataagagttcactca
gagaaagaattagttagagattttgagaaggttgcatctgcccttaatccagagaaggac
tggtctatacgtattgctgctatgcaaaggattgaagccttggtatatggaggtgctatg
gattatccatcatttcttatgctcttaaagcagctggttcctccattgtcttctcagcta
tccgaccgacgatccagcatagttaaacaggcatgccatctacttaatgtactatcaaag
gaacttcttggtgattttgagccaagtgctgaaatatttattccggtactttttaagctt
gttgtcataactgtgcttgtgattgccgaatccgcagacaactgcataaaatctatcctg
cgtaactgcaaggtttcacgtgttcttccacttatagctgatacggcaaagaatgaccac
agtgcaatcctccgtgctaggtgctgtgaatatgcactcttaatattggagtattgggcg
gacactccagaaatacgccgctcagctgatttatatgaagacctaataaagtcatgtgtt
gcagatgcaatgagtgaggtccgtgcaatggcaaggacttgctataggatgttcactaag
acatggcccgagcgttcacgccgactgtttatgtcatttgatcctgccatacagaggata
ataaatgatgaagatggtggcaagcacaagcggcatccttctccatcattgcatgagaga
ggagtccaactttctcgtgcttcatcacatgcaggtggtaaccattttggatatggtact
tcagctattgtggcaatggacaagggtgcagctatttcttctgaatcgtctctctcgtct
agcagtcttttattgtcacagtcaaagacaattggtagaagtgctgaaagaagtatagag
agtgtgctgagttcaagcaaagaaaaggtttcagccattgaaagcttagtgaaaggtgta
agcatgtcagataggcacaatttctctgctattcgctcaacaagcttggaccatggagtt
gaccatacatcctctcatgatcctcctaccctatctgctacacgtgcttcatattcatcc
cttaatggaataactagctcaagaaatgatggttcatccaaagaacgatcaagctcacct
tatttgcgtaatctatcatctgaactgatatcaggcttgtcactgccatctttaagatct
tcagggaggtctcaagatggcagcactatggaggagaatcatgatacatggccaaccagg
cgatcaccaaaagtgcagatgcacaaacactatgtggatatgcccaatagggatgtccgt
tacagaaattcactcaatagtcatgttccacacttccaggggcctcttaggaagcaagta
gcatcaagagcttctgcaagtggaaggcacagatttgatgatgatcatgtcccatctaat
gacatgcgtggctatactaatggtctggcatctctaaatgatgcactctctgagggcctt
agtccaagttcagactgggaagctagagttgcagcattcaacttcattcagatactgctg
caacaaggacagaaaggcattcaagatattactcagcactttgaaaaggttatgaagctg
tttttctgttacatggacgattctcatcacaaagttgcacatgcagctttctccacactt
gcagatattattccagcattcaaaaaacattttgagagctatgttgaaagaattttacca
cacatcttttcaaggcttatcgatccaaaggaattggttcgacatccatgttcctcaacc
ttggaaattgttggccaaacatattctattgacacattattacctgcacttgtacgttca
ctggatgaacaaaggtccccaagggcaaaattggctgttcttgagtttgcaaacaaatca
ttcgacaattacacagtagattctgaaggttacagtaacagtggttttcttaagctctgg
cttacaaaactagcacctttaatacatgaaaagaatgctaagttgaaggaagcatctatt
tctggaatgatatcagtttattctcattttgattcagccgtagtcataaatttcatcctt
agtttgtcgattgatgaacagaatattgtgaggagagctttgaagcaatatactcctcgt
attgaggtcgatttggtcaactaccttcagaacaagaaagaacgtccacatcccaaatct
tacgatcaagttgattctagcgcttcttctgaagatggttatgctctgacatttaagaaa
agcttcccatttggacgcttttctgatagtttagttgacactgaatcaagaaaaaagatg
aatactgtgcaggaatcagcattacttaacgttcccatcagtcgaactacctctgatgtc
tgcactgatcatgctaagcaatgttttggacgtgcctctgaagctgatgttctcatgcaa
agtagggaactaaagaacaatacctgcacagttgtagaagctgtgcattcatgggcagat
tatcctgagaaatcagatgcaaccatggatgatgaaaattctacgggtactactcgcttg
gatttgggccatcttccatctgatggacatagttctgctctagcaatttctggggagcac
actcaagagggagatccatttgttgatcgtagttctgtaaatattatcccacacaccagt
aacggccccagcgtaccacatcttcttcatcggattggcaatggtggtgaagtttcatgc
ctagacaggcaggaggcgttacgacagttggttagagcttccaccaataaagataacttt
atatggaaaaagtatttcaaccagattttaacaactgtccttgaagtgttggatgatgct
gattcctctgtgagggagatttctctgttgttagttgctgagatgctccacaatcagaaa
gattctatggaacaatccattgagattgttcttgaaaagctcctgcacgtcaccaaagat
gatgttgcgaaggtttcaaatgaagcacatcaatgcttatatgtagtcttggcaaaatat
gacccttttagatgccttgctattattgtgcctttgctggctagtgatgatgaaaagaca
cttgtcatgtgtatcaattgtttgacaaagcttgttgggcggctctcacatgacgaattg
gttactcaactgccttcatttttacctgcagtgtttgatgctttcagtaatcagagtcca
gatgttcgcaaggctgttgtattctgtttagtggatatgtacatcatccttggaaaagaa
tttgtaccatacctggagggccttagcagcacgcagctgcgcctagtaacaatctatgca
aatcggatatcacaggcaaggtctggtgcaccagtggctgctacccaatga
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