Setaria viridis (green foxtail): 117862389
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Entry
117862389 CDS
T07951
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117862389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117862389
03016 Transfer RNA biogenesis [BR:
svs03016
]
117862389
Enzymes [BR:
svs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
117862389
Messenger RNA biogenesis [BR:
svs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
117862389
Transfer RNA biogenesis [BR:
svs03016
]
Prokaryotic type
tRNA degradation factors
117862389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
S1_RRP5
Urease_gamma
KH_1
Motif
Other DBs
NCBI-GeneID:
117862389
NCBI-ProteinID:
XP_034601742
LinkDB
All DBs
Position
1:complement(31022984..31031120)
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AA seq
978 aa
AA seq
DB search
MSMAVAASLRSLARRRPRLRLPAAPLAVPGARAAFLSGAAEEAATDAAAPPPAPGRKVLE
SFREEFEIGGRTIAFETGKMARFANGSVVISMEDTHVLSTVAAAKSNEPVRDFLPLTVDY
QEKQYAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVLSSDGK
QDPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLVYACSR
DKTLMIDVQAREITERDLQAGMKLAHSEAIKCIDPQIRLAKRAGKEKKEYKISLISDTSY
EKIRTLSEAPIEEVFTDSSYGKFERGEALEKITQSVKAKLEEENDEDSLKFLSKAVDTVR
KQVIRKRIIEEGLRVDGRQLDEVRPLFCEANTYPVLHGSALFSRGDTQVLCTVTLGAPGD
AQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPPESDF
PYTVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVDPTTGDISN
YRILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIVCESLEPARKARTQIL
DRMDQEISIARAMNDGSAPRLATLSFSSDSLRKLLFHRKKIEQETGARVSVSDGTVTIVA
KTQPIMDKAIEKVEFLVGREIEVGRTYKGTVSSVKEYGAFVEFNGGQQGLLHISELSHEP
VSKVSDIVTVGQSLSLMCIGQDVRGNIKLSLKATLPQPRKKKDLESKGPLPSQEVGWAAV
ENMPSVGADAEPSSSKHEDGTAEEAPAFSTPSVIIRSEADCDAQDAANGPKKRARVSKSS
PRPYKAPSERQEVRTATAKKARGATKKTDKKVKIEESGSNSLETSGSEEVPEPTASNTLD
LKQTPVNFQSGSMKLGDVVTAKVYQIRAFGLVLELSDGARGMHKFEANGQKEFEVGQELL
VKCASFNAKGIPVFSLLD
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatggcggtggccgcctccctccgctccctggcgcgccgccggccccgcctccgc
ttgcccgcggcgccccttgccgtccccggcgcccgcgcggcattcctctccggcgcggcc
gaggaggcggccacggatgcggcggcgccgcctcctgccccggggcggaaggtgctggag
agcttccgcgaggagtttgagatcgggggccgcacaatcgccttcgagacgggaaagatg
gcgcgcttcgcgaacggctccgtggtgatctccatggaagacacccacgtcctctcaacc
gtcgccgccgccaagtccaacgagcccgtccgggacttcctcccactaactgttgattat
caagaaaaacaatatgcgcaaggtgttattcccacaacatatatgcgcagggaaggtgcc
cctaaggaaagagaacttctgtgtgggcgtataattgatcgacctataagaccactgttt
cctcctggcttttaccatgaagttcagatcatggtaaatgttctttcatcagatggaaag
caagatccagatgtgatggctgctaacgcctcttccgctgcattaatgctatctgatata
ccttggaatgggccgattggagtaatacgtgttgggagaattgatgggaattttgtctta
aaccctacagtcgatgagctaggtttgagtgatctcaatcttgtttatgcatgttcacgg
gataaaactttaatgatagatgtacaagctcgtgaaataactgaaagagatcttcaggca
ggaatgaagcttgcacactctgaggcaattaaatgtattgaccctcaaataagattggct
aagcgagccggtaaagagaagaaagaatacaagatatctctgatttcagatacatcctac
gagaaaattagaacattatcagaagcacccattgaggaagtcttcactgattcatcatat
ggcaagtttgagcggggagaagctttagaaaaaatcacacaatctgtgaaagcaaagctt
gaagaagaaaacgatgaggacagcttgaagtttctttccaaggcagttgacacagtgagg
aaacaggtcatacgtaaaagaataattgaggagggacttagagtagatggtagacaactt
gatgaggtcagaccattgttttgtgaagccaacacatatccagtattacatggatctgcc
ctgttttcacgtggagatacacaggttctgtgtacagttacccttggtgctcctggtgat
gctcagcgactggattcaattgttggccctccaacaaagcgtttcatgcttcactatagc
tttccaccattttcgataaatgaagttgccaaacgtgggggcctgaatcgacgggaagtt
ggacatggcactcttgcggagaaagcattgctcgctgtgcttcctccagaaagtgatttt
ccatatactgttcgggtaaattcagaagtcatggcctctgatggttcgacatcaatggca
tcagtatgtggaggaagtatggctttgatggatgctgggataccagtaagagaacatgta
gctggtgtttcagtaggtcttgtaagtcaagtagatccaacaactggagatatttctaat
tatcgcatcttaacggatattttgggtcttgaagatcatttgggtgacatggacttcaaa
attgcaggaacaaggaaaggtattactgctattcagctggatataaaacctgctggaata
ccattggacatagtatgtgaaagtttagagcctgcacggaaggctcgtactcaaatcctt
gaccgcatggaccaggaaataagtatcgcacgtgctatgaatgatggaagtgcccctcga
ttagctacactgagcttcagcagcgattctcttaggaaactgcttttccacaggaagaaa
attgagcaagaaacaggtgcacgggtatcagtcagtgatggtacagtcactattgttgct
aaaacccaacctattatggataaagctattgagaaggttgagtttctcgtgggacgtgaa
attgaagttggtcggacatacaaaggaactgtttcctcagttaaggagtatggcgctttt
gtggagttcaatggtggacagcaaggccttcttcacatttcagagctgtcacatgaaccg
gtatcaaaagtctccgatattgtaactgttggccaatcgctctctttgatgtgtattgga
caggacgtgaggggtaacattaaactctcacttaaggcaaccttaccccaaccacgtaag
aagaaggatttagagagtaaaggtcctttgccaagtcaagaagtaggctgggctgctgta
gagaacatgcccagtgtaggtgctgatgctgagccatccagtagcaaacatgaagatggc
acagctgaggaggcacctgcattttccactccttcagttataatacgaagtgaggctgac
tgtgatgctcaagatgccgcaaatggtccaaagaagcgggcaagggtttccaagtcatct
cctagaccatataaagcacccagcgaacgtcaggaggttaggacagctaccgctaagaaa
gcccgaggtgctaccaagaaaactgataagaaagtaaagattgaggaatctgggagtaac
agcctggaaaccagtgggtcagaagaggttccagaaccaactgctagcaacactctggac
ctgaagcagactccggtgaacttccaatctgggtctatgaagttgggtgatgtggttaca
gcaaaggtctatcagattcgagcctttggactagtacttgagctgagcgatggagcacgc
ggaatgcataaatttgaggcaaatggtcaaaaggaatttgaagttggacaggaactactt
gtgaaatgtgcaagtttcaacgcgaagggaatcccagtcttctcgctgttggactag
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